PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 425147
Common NameSELMODRAFT_425147
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Nin-like
Protein Properties Length: 474aa    MW: 52165.3 Da    PI: 8.0488
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
425147genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK49.68e-169471452
  RWP-RK 14 FslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
             s+pi++A+keL+v+lTvLK++C ++GI+R Ph k+ksl
  425147  9 LSMPITQASKELKVGLTVLKKRCHEFGIPRRPHHKLKSL 47
            479**********************************97 PP
2zf-C2H211.70.00077219239121
              EEETTTTEEESSHHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
              ++Cp Cgk F +   L  H+r
   425147 219 HECPECGKEFVSIKGLSGHMR 239
              79*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.878167IPR003035RWP-RK domain
PfamPF020424.8E-131047IPR003035RWP-RK domain
Gene3DG3DSA:3.30.160.607.6E-5217241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.44E-7217241No hitNo description
SMARTSM003550.0018219241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.572219246IPR007087Zinc finger, C2H2
PfamPF139126.3E-9219243IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SuperFamilySSF576678.44E-7369393No hitNo description
PfamPF139120.078448464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MMDISLEDLS MPITQASKEL KVGLTVLKKR CHEFGIPRRP HHKLKSLESL IHKSQELAKD  60
SDGNAQNPAI HAVHELEKHG DGAGRSNQAV LPGNLQSQLQ AAAASVMRSA KRKIVEQEHE  120
YEKQQQQNGQ VGEDRHEKDL VRSTKRKKAY PQLRHCLVEE SLFQDLDHSE DDDRSSGDDV  180
QRAGGCNGLY ALRANPKKNL KFAEEQIKKK KLSSKGKDHE CPECGKEFVS IKGLSGHMRC  240
HPESRIARAA AAIAPRSPAK IKIKEVIEEP DYENDTSLEQ VYLRHWAREE EEKKKKMGAL  300
MVEKVAMEEE GEENSSKVVI HDDPLPQWQP LKIRIKCSSR ALDPTGGGAA ATVVEGSRKG  360
DGCRLESTGG AAVVECSRCK LAFESSTALA AHHCVRKMSR KSKIISTKIE DALPPSSGDP  420
GVVNVPVDII ADEEDEVVCV DKGLTGGFNC LNCHRVFATG KALRSSCGRK CFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002989500.10.0uncharacterized protein LOC9636375
TrEMBLD8SS580.0D8SS58_SELML; Uncharacterized protein
STRINGEFJ126820.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-14RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]