PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

426818

Common Name

SELMODRAFT_426818

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 879aa MW: 98592.3 Da PI: 8.0107

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
426818	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.5e-09	16	44	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 rg+WT eEd ll ++v+++G g+W+t ++ 426818 16 RGPWTREEDALLMQYVNEHGEGSWRTLPK 44 89***********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-11	7	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.68E-8	10	47	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.76	11	73	IPR017930	Myb domain
Pfam	PF00249	4.1E-7	16	44	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.25.10.10	7.9E-17	412	828	IPR011989	Armadillo-like helical
SuperFamily	SSF48371	6.12E-13	414	637	IPR016024	Armadillo-type fold
CDD	cd00020	8.39E-5	418	522	No hit	No description
SuperFamily	SSF48371	6.12E-13	694	815	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence Send to blast
MQMGRSPCCE KIGLNRGPWT REEDALLMQY VNEHGEGSWR TLPKAADLLV MSSLKCSEGS 60 CYHRTKKVSR GTVCRCPQEY RSLCGRGNHS SSFFRLCSRF STFKHLNPQY QCVVVPHPDV 120 EQQPSTPKPS APELQQLSTF LKSSAPVERN NSRSPEQLNL IAFRLAVLEK FATGLGKLAF 180 VWATVVLLGG FVSNIPAKDF WTISALLLTE GTRVFSRSSE LEWQQANYSL GILGFRSFLF 240 DKSARLWEKF SGVLDHDHSE QNVSRDRLSK KPVKKDLHQG FAARRIWCVG SAYVKFLPTR 300 IISLFMYFLQ LASATVTACF SVYRLAEHGF NAQGNNTEQA LTVFYAMMLA ETSLFLLERT 360 YWEFKLRYQR LLEVVTRTCE LDQDDIETMK QYWYTLYSRS LNGSVFDGLG MDLIDFTVEK 420 LQSSIREEQL GSVNILSALV SKGDSMEETQ RRIGTTPGVV ERLLEMITWK DPSEAEIRKA 480 ATIVIKHLVR HSHNCFRISA IPGSLEALTA LLPERQEEVL EEKSYRLTIL NGLAVDYRTC 540 VRIGHTSGLL SILVEFIQDE VRTSKEVFRP SLDLLKTLAS VRGDSGRSLR KKMVSVVPAV 600 RSLQRICNLE DLELQDLAVD VIKLLATEDE LRDCIGATGG VIQSLMAIFT RETAPNSDQL 660 TGGMRAGEAI IVLVFQCPNN CSRLLMHKSC RQGGVSKTLK SLINMLTKPV GVHAATILQS 720 LCGDLNDEEK LELGAAISRI IQMVLESTDK EQQAAIGLAA AIIPWLDRRN FEQGVLSQQS 780 RLCEKFTELL SHTAPSRSLN RIRRYSVELL NSLVAKDARF LRRFREDGEM EASLGAMLAT 840 ASDEENFLTF SDFVGLTKHS SSLEELVNSA LLNLHRAG*

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence Send to blast

MQMGRSPCCE KIGLNRGPWT REEDALLMQY VNEHGEGSWR TLPKAADLLV MSSLKCSEGS  60
CYHRTKKVSR GTVCRCPQEY RSLCGRGNHS SSFFRLCSRF STFKHLNPQY QCVVVPHPDV  120
EQQPSTPKPS APELQQLSTF LKSSAPVERN NSRSPEQLNL IAFRLAVLEK FATGLGKLAF  180
VWATVVLLGG FVSNIPAKDF WTISALLLTE GTRVFSRSSE LEWQQANYSL GILGFRSFLF  240
DKSARLWEKF SGVLDHDHSE QNVSRDRLSK KPVKKDLHQG FAARRIWCVG SAYVKFLPTR  300
IISLFMYFLQ LASATVTACF SVYRLAEHGF NAQGNNTEQA LTVFYAMMLA ETSLFLLERT  360
YWEFKLRYQR LLEVVTRTCE LDQDDIETMK QYWYTLYSRS LNGSVFDGLG MDLIDFTVEK  420
LQSSIREEQL GSVNILSALV SKGDSMEETQ RRIGTTPGVV ERLLEMITWK DPSEAEIRKA  480
ATIVIKHLVR HSHNCFRISA IPGSLEALTA LLPERQEEVL EEKSYRLTIL NGLAVDYRTC  540
VRIGHTSGLL SILVEFIQDE VRTSKEVFRP SLDLLKTLAS VRGDSGRSLR KKMVSVVPAV  600
RSLQRICNLE DLELQDLAVD VIKLLATEDE LRDCIGATGG VIQSLMAIFT RETAPNSDQL  660
TGGMRAGEAI IVLVFQCPNN CSRLLMHKSC RQGGVSKTLK SLINMLTKPV GVHAATILQS  720
LCGDLNDEEK LELGAAISRI IQMVLESTDK EQQAAIGLAA AIIPWLDRRN FEQGVLSQQS  780
RLCEKFTELL SHTAPSRSLN RIRRYSVELL NSLVAKDARF LRRFREDGEM EASLGAMLAT  840
ASDEENFLTF SDFVGLTKHS SSLEELVNSA LLNLHRAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024517643.1	0.0	uncharacterized protein LOC9656766
TrEMBL	D8SXL2	0.0	D8SXL2_SELML; Uncharacterized protein
STRING	EFJ10904	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35515.1	4e-17	high response to osmotic stress 10

Link Out ? help Back to Top
Phytozome	426818
Entrez Gene	9656766

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]