PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 42726
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 547aa    MW: 59122.8 Da    PI: 8.3181
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
42726genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.35.4e-2360125171
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
              rk+ksL++l+++fl+l+ + e + v+l+e++++L    v   rRRiYDi+NVLe+++++++k+kn+++w+g
    42726  60 RKDKSLGVLCENFLALYGNGEVESVSLDEATEKL---GV--ARRRIYDIVNVLESIDVMARKAKNQYSWHG 125
              79*****************999************...**..****************************98 PP
2E2F_TDP60.62.4e-19238317170
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
              r+eksL+ll+qkf++l+  s+ ++v+l+++a+ L+ +     + k+k RR+YDi+N+L +l+li k     ++k+++ w 
    42726 238 RREKSLVLLSQKFVQLFLASSLNVVSLDTAARLLLDDahddaKLKTKIRRLYDIANILCSLHLIRKvhladSRKPAFLWL 317
              689*****************99************999*****999*********************99999999999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-2657126IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.35E-1459124IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-2860125IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.1E-2061125IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-19235319IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.7E-30238318IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.0E-17240317IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.49E-11240317IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDGTTRACED SETRGGGRAS EAAAAVGAGG RDGGASEART AAKADGRDGA GASASAAYSR  60
KDKSLGVLCE NFLALYGNGE VESVSLDEAT EKLGVARRRI YDIVNVLESI DVMARKAKNQ  120
YSWHGVRRLP ESLKRLKQAG LKEFGANFEI SGANGSEENS NDDSAASREG EEEKDVGGDE  180
HNQQNIDSDR SSPTTTTTAT TTTAVLHFDS RNDSVRNKAP FAGQERFAGP CAQGDDGRRE  240
KSLVLLSQKF VQLFLASSLN VVSLDTAARL LLDDAHDDAK LKTKIRRLYD IANILCSLHL  300
IRKVHLADSR KPAFLWLSRE NSTADLIAQG KGLQWFSKLD EDGKPLPMAS SKFGPAMRPQ  360
TTSTTKNPTT NQRKRAANKD SNSAEAKRPR GRPRLPGGNA QMSLTPDNVA QLNHLFAFTT  420
AQLAARYPLD VNADLNSVIA QRTIGNTNFL HRLAQASMAQ AQAAHHLMSS SPAQPPQYET  480
SKLPTLEGAG GDLSPPTLPP FSTIMPAWGM SGMSYQNNQM HDMMRLYENS MNAWQNGNTQ  540
QQNVRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A6e-42593103228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005880.0CP000588.1 Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419177.10.0predicted protein
TrEMBLA4S1M60.0A4S1M6_OSTLU; Uncharacterized protein
STRINGABO974700.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.13e-39DP-E2F-like protein 3