PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

42817

Common Name

MICPUCDRAFT_42817

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C2H2

Protein Properties

Length: 950aa MW: 99997.3 Da PI: 7.8269

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
42817	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F + L rH tH 42817 132 HECETCGRVFASAPALARHVATH 154 78******************999 PP
2	zf-C2H2	14.3	0.00012	160	183	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C+k+F + L rH + H 42817 160 FVCAACSKRFATAAALARHRANvH 183 89*****************99877 PP
3	zf-C2H2	11.2	0.0012	194	216	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk++ + n+++H ++ 42817 194 FTCRSCGKRYLDAANFVKHKLRC 216 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	7.0E-4	132	154	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.69E-10	132	179	No hit	No description
PROSITE profile	PS50157	11.863	132	159	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	134	154	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.5E-6	147	179	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.026	160	183	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.388	160	183	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	162	183	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	194	214	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 950 aa Download sequence Send to blast
MAGATHSISS SSLDGGVGGG VGGGSGRTSN ASSLSRAGSR QGSQGSRGSS RGSLSGGEIE 60 PARGGDGGGA AAAARGGVVA GGFAARRRLP GRPPGGGGPR AASIGPQPPQ PRPPQMVERR 120 RPRDGLKRSG GHECETCGRV FASAPALARH VATHEAGMPF VCAACSKRFA TAAALARHRA 180 NVHGKAVGDG EEYFTCRSCG KRYLDAANFV KHKLRCARQD EMEASTRRGE DVAAGGAGSP 240 RAPRRGRDGR RFVDINAAAE RDTHDFGDED EDEDDMMEYY SGASDDDGAS PSRKKSSHPL 300 QRPARRVDGG GVFSGASSTG SGNNASGNKQ GGGSPGKTIW SSAGSRSRKS KEEEERMRRK 360 RLGLPPPPKI LDEQTKAKAR MSRKEHERAL AEEARKKADI ERKEKEMHLR LLQQRQIFHN 420 QLLEEEAHRR NIGMDVDAEI IRSGVDGSLP KYGPEMALEL AKRLAREEEN AANNTAAKEK 480 EAKKKKGEEE NAAAEEAAKK MAAATLEEEK KPEPEPAAAA GAAREGETAR EGETSTDAKE 540 AEGASAAAAN ADDDGTTPAS DATTATEPAT EPATEPATEG EISAEPAEPA AAANSPSKVD 600 VGGPIDPQLE RKGFKGVSLK LAEKPPLPDA AGGGGRLKKG FLGGVLGGDK KSASASETRL 660 PVLGSGAPTK ERKRSFDPAA TRRANSDSNL LHAADYAGGD RVAEPRKSHV QRMVEAAERD 720 ATETLLGKMR LEAEKAEAAF GGWRASEKPR AGRFAVGAWD RYERDLEEER DPYFVKWCKA 780 RGIPKAEDYD GAERTRVFCA QREALWHAGD HDPIPEDTEM TNGLAVIDLV KLRGEVEKVL 840 EKGGDVGDVQ LPGFNRPLKS LNGSSTSPTS VAGARHSAAA SASNGDWSTK PTPTPTPAPK 900 PAEKTRERPG AASRVKVIRV VSDDSDEDSA GEAEERRDEG DAGRSAEAT*

Sequence ? help Back to Top

Protein Sequence Length: 950 aa Download sequence Send to blast

MAGATHSISS SSLDGGVGGG VGGGSGRTSN ASSLSRAGSR QGSQGSRGSS RGSLSGGEIE  60
PARGGDGGGA AAAARGGVVA GGFAARRRLP GRPPGGGGPR AASIGPQPPQ PRPPQMVERR  120
RPRDGLKRSG GHECETCGRV FASAPALARH VATHEAGMPF VCAACSKRFA TAAALARHRA  180
NVHGKAVGDG EEYFTCRSCG KRYLDAANFV KHKLRCARQD EMEASTRRGE DVAAGGAGSP  240
RAPRRGRDGR RFVDINAAAE RDTHDFGDED EDEDDMMEYY SGASDDDGAS PSRKKSSHPL  300
QRPARRVDGG GVFSGASSTG SGNNASGNKQ GGGSPGKTIW SSAGSRSRKS KEEEERMRRK  360
RLGLPPPPKI LDEQTKAKAR MSRKEHERAL AEEARKKADI ERKEKEMHLR LLQQRQIFHN  420
QLLEEEAHRR NIGMDVDAEI IRSGVDGSLP KYGPEMALEL AKRLAREEEN AANNTAAKEK  480
EAKKKKGEEE NAAAEEAAKK MAAATLEEEK KPEPEPAAAA GAAREGETAR EGETSTDAKE  540
AEGASAAAAN ADDDGTTPAS DATTATEPAT EPATEPATEG EISAEPAEPA AAANSPSKVD  600
VGGPIDPQLE RKGFKGVSLK LAEKPPLPDA AGGGGRLKKG FLGGVLGGDK KSASASETRL  660
PVLGSGAPTK ERKRSFDPAA TRRANSDSNL LHAADYAGGD RVAEPRKSHV QRMVEAAERD  720
ATETLLGKMR LEAEKAEAAF GGWRASEKPR AGRFAVGAWD RYERDLEEER DPYFVKWCKA  780
RGIPKAEDYD GAERTRVFCA QREALWHAGD HDPIPEDTEM TNGLAVIDLV KLRGEVEKVL  840
EKGGDVGDVQ LPGFNRPLKS LNGSSTSPTS VAGARHSAAA SASNGDWSTK PTPTPTPAPK  900
PAEKTRERPG AASRVKVIRV VSDDSDEDSA GEAEERRDEG DAGRSAEAT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	92	RRRLPGRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063505.1	0.0	predicted protein
TrEMBL	C1N6B6	0.0	C1N6B6_MICPC; Predicted protein
STRING	XP_003063505.1	0.0	(Micromonas pusilla)

Link Out ? help Back to Top
Phytozome	42817
Entrez Gene	9688944

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]