PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

429122

Common Name

SELMODRAFT_429122

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 238aa MW: 26944.7 Da PI: 5.7214

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
429122	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	53.5	5.2e-17	52	116	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+G +r+v P Gg +r k+ 429122 52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGSKVRDVslsPTGGNKRTLKS 116 67889**************86533444*******************977778888887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.3E-25	52	116	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-8	57	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MARASKRSRE DDGIMVPTKK RRLRSERACK LTAQEVRDQN LYGVWEHHDL PDNVYQCPRC 60 QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGSKVR DVSLSPTGGN KRTLKSHGGD 120 KIAPVVQEEF VGESSQVMGD YAAGFDQTIY WEQGYGVGDC AQRLSHEAFD QNSYWELLPG 180 LGQGPVGDCV QEVFAQTSEL GDGVFADQFS DFELYPKRVL ETTGTTEKEN ENKEQEH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024520303.1	1e-148	uncharacterized protein LOC112342540
TrEMBL	D8T548	1e-178	D8T548_SELML; Uncharacterized protein
STRING	EFJ08198	1e-179	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-12	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	429122
Entrez Gene	9658512

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]