PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 429480
Common NameSELMODRAFT_429480
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Nin-like
Protein Properties Length: 511aa    MW: 56575.2 Da    PI: 8.485
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
429480genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK57.92e-189412052
  RWP-RK 20 dAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
            +A+keL+v+ TvLK++CR++GI+RWPhRk+ksl
  429480  9 QASKELKVSRTVLKKQCREFGIPRWPHRKLKSL 41
            79*****************************97 PP
2zf-C2H211.60.00084253273121
              EEETTTTEEESSHHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
              ++Cp Cgk F +   L  H+r
   429480 253 HECPECGKEFVSIKGLSGHMR 273
              79*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.55161IPR003035RWP-RK domain
PfamPF020421.6E-14941IPR003035RWP-RK domain
SuperFamilySSF576678.44E-7251275No hitNo description
Gene3DG3DSA:3.30.160.608.4E-5251275IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.9E-9253277IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.572253280IPR007087Zinc finger, C2H2
SMARTSM003550.0018253275IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
SuperFamilySSF576678.44E-7402426No hitNo description
PfamPF139126.2E-5481500IPR007087Zinc finger, C2H2
SMARTSM00355210481501IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MVVMVTPIQA SKELKVSRTV LKKQCREFGI PRWPHRKLKS LESLIHKSQE LAKDSDGNTP  60
NPVIHAVHEL EKQKKKMEES PGMELDDRTK RFRQAIFKAS YKQRRPAVAP CRNGGSGGGN  120
SDSSHNDGST EQQQLKDSGA PFSPKRKIVE QEHEYEQQQQ QNGQVGEDRH EKDLVRSTKR  180
KKAYPQLRHC LVEESLFQDL DHSEDDDRSA GDDVQRAGGC NGLYALRANP KKNLKFAEEQ  240
IKKKKLSSKG KDHECPECGK EFVSIKGLSG HMRCHPESRI ARAAAAIAPR SPAKIKIKEV  300
IEEPDYESDT SLEQVYLRHW AREEEEKKKK MGALMVEKVA MEEEGEENSS KVVIHDDPLP  360
WQPLKVRIKC SSRALDPTGG AAAATVAEGS RKGDGCRLES TGGAAVVECS RCKLAFESST  420
ALAAHHCVRK MSRKSKIIST KIEDALPPSN GDPGVVNVPV DIIADEEDEV VCIDKGLTEG  480
FKCLNCHRVF ATGKALGGHK HSPCGLKCFV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002989500.10.0uncharacterized protein LOC9636375
TrEMBLD8T6B60.0D8T6B6_SELML; Uncharacterized protein
STRINGEFJ077990.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.12e-26RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]