PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 43258
Common NameMICPUCDRAFT_43258
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 251aa    MW: 28005.9 Da    PI: 8.0276
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
43258genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-05209229121
              EEETTTTEEESSHHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
              y+Cp Cg+  ++   L++H++
    43258 209 YRCPCCGRQTRTMQALMQHMN 229
              9*******************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGYYSSSDSD DYATTAHVGL LYTDSSNNDA FSVYDVQCVA RDYGYTQCQH GRGEGVLDFR  60
RADANGDSEI VRVWYRTGTV GTYIKHPRAQ QRTQLFRRDN TQISELHDIF NNPRVHTGCG  120
YHRRGDQNTP YQRRGDRNTP CPSCGRMHRG MLGAVQHFES GSCPNCPNRE DACRAVHGLV  180
NQVGSHMVVQ QIGWDSVHTT SFDPNGLNYR CPCCGRQTRT MQALMQHMNA RPECRSGASG  240
IAPSLAQLAY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064217.10.0predicted protein
TrEMBLC1N8690.0C1N869_MICPC; Predicted protein
STRINGXP_003064217.10.0(Micromonas pusilla)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]