PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

432649

Common Name

SELMODRAFT_432649

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 220aa MW: 24893.7 Da PI: 10.2594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
432649	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	29.1	2.1e-09	167	206	4	42
zf-Dof 4 kalkcprCdst.ntkfCyynnyslsqPryfCkaCrryWtk 42 ++++cp C + t+f +nny qPry Ck C+ Wtk 432649 167 EQIDCPWCGRMwCTRFYDFNNYKPGQPRYHCKPCKLTWTK 206 7899**887369***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	0.002	166	211	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-8	168	206	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MKRKAQDAEI PMLDDLEDEV QGDGWEYEGG LACPPWDPEA LKSFCAMDDW CGEPVMARVK 60 PKEPANKPKI SSEPERPATP NKPKRKSSSE PKRPKTSSEP KRPKTPSEPK RPNISSEPKR 120 PKTPSEPKRP KALKSCGGEA KTRKNASAKV TPELRALLAK VRATLPEQID CPWCGRMWCT 180 RFYDFNNYKP GQPRYHCKPC KLTWTKDKVP RPRSKRPAF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	94	KRKSSSEPKRPK
2	90	96	PKRPKTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002994749.2	1e-147	neurofilament medium polypeptide
TrEMBL	D8TGN1	1e-154	D8TGN1_SELML; Uncharacterized protein
STRING	EFJ04184	1e-155	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	3e-07	Dof family protein

Link Out ? help Back to Top
Phytozome	432649
Entrez Gene	9652956

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]