PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 43387
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 115aa    MW: 13715.4 Da    PI: 9.7654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
43387genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-182368148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     r rW++eEde+l+ + +++G++ W+tIar+mg gRt+ qc  rw+ +l
            43387 23 RERWSEEEDEKLKTLKERYGSR-WATIAREMG-GRTDQQCMGRWRRHL 68
                     78********************.*********.************986 PP
2Myb_DNA-binding39.21.6e-1274115144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      rg+W  +Edell  +  ++G++ W+ I + ++ gRt+ qc+ rw
            43387  74 RGAWARDEDELLCGLYDEYGPR-WSFICQSVP-GRTAQQCRARW 115
                      89******************99.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-5126IPR009057Homeodomain-like
PROSITE profilePS512947.54117IPR017930Myb domain
PROSITE profilePS5129424.3241872IPR017930Myb domain
SuperFamilySSF466894.4E-2620115IPR009057Homeodomain-like
SMARTSM007174.1E-162270IPR001005SANT/Myb domain
CDDcd001674.07E-122568No hitNo description
PfamPF139211.2E-172685No hitNo description
Gene3DG3DSA:1.10.10.606.4E-232776IPR009057Homeodomain-like
SMARTSM007170.002573115IPR001005SANT/Myb domain
PROSITE profilePS5129417.42673115IPR017930Myb domain
CDDcd001678.05E-776115No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1577115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGTRSGQQCA QRWRHKVNPG IRRERWSEEE DEKLKTLKER YGSRWATIAR EMGGRTDQQC  60
MGRWRRHLDP TVTRGAWARD EDELLCGLYD EYGPRWSFIC QSVPGRTAQQ CRARW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-2411156151MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-2411156151MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005941e-136CP000594.1 Ostreococcus lucimarinus CCE9901 chromosome 14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421243.19e-82predicted protein
TrEMBLA4S7B62e-80A4S7B6_OSTLU; Uncharacterized protein
STRINGABO995364e-81(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-21myb domain protein 3r-4