PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

437670

Common Name

SELMODRAFT_437670

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

SBP

Protein Properties

Length: 938aa MW: 102626 Da PI: 6.6914

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
437670	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	6e-41	73	150	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hska+++lvs +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ 437670 73 MCQVDDCKADLSNAKDYHRRHKVCEMHSKAAKALVSRNMQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTQP 150 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-33	65	135	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.111	71	148	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.11E-38	72	152	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.3E-30	74	147	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	5.0E-8	667	821	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.46E-8	677	820	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.72E-7	678	817	No hit	No description
PROSITE profile	PS50297	9.649	714	818	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MNATKTIVLD ASSTDEDDAE CLTLKLGGRT YSSTDESARN GKRQRSTSPG SSCQQPQQPQ 60 QQQQQSQQQQ YPMCQVDDCK ADLSNAKDYH RRHKVCEMHS KAAKALVSRN MQRFCQQCSR 120 FHPLQEFDEG KRSCRRRLAG HNRRRRKTQP DAAAAQAFLL SEDDVAGKSA GLLKLLQVLS 180 QLQAASALEK ANAVQERDLA LEYLRRAVSV STALGDCSKE GNGFGQKPEV KSPYDAQVLS 240 ALPGLPLLDA FSVLLQNNLK AQAKELPAPV VSQPLQNGTD YLPRGSHAPP PPTSRPAHSV 300 IEVDGPSGHK PFPFQSPVAA AVNKAAVAPD SRDAVRPSLL GLLGARDRPP SPAVPPTSFI 360 QAGHSQQSSE SQSGSEQSPD SSYADWQERT GRISFKLFDR NPGDFPQLLR AQILEWLSHV 420 PSDMESYIRP GCVVLAIFLS MPNSAWQKLC NDLLGNLKRL IDSSPTDFWN KGRILVQVCD 480 QSAYVVDGKV QAVSLKSRDF PEILAVRPLA AVRNEETRFL VHGVDLAGAD TRIYCAFHDE 540 YNLQSWSEID ANEEDAEGSL CFTHTPCESI GRCFIEVERN GGSSFAPVLV ADNAICDEVR 600 SLEEDIEIAS SRAGAMADSC AFPEEYSVAF VDLVELAVEH ETSRFLHELG WVFQKQHWQL 660 MKKQDHCDLR SSTMKWLLMF AVEREWCAVV KALLDTLYSF QSTGKVEDVA DVLESVNLLH 720 RATSRNSITM VEFLLTYQSP VAKRKESYVF SAATAGPAGL TALHVAACMI GADRVVSALT 780 SDASQVGLQS WNSARDINGQ SPFDCALSHG NFTYIQLVWS KIAASRGKSI PSQATNWIQN 840 ALSIELPPWP SSSTQTPGGS KVLLPASCGS ECVAAAAGQH PVRQNFAGIR GPMYRPFILS 900 MVAIAAVCVC VCLLLKSPVE VRFISPFTWE SVQFGPK*

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MNATKTIVLD ASSTDEDDAE CLTLKLGGRT YSSTDESARN GKRQRSTSPG SSCQQPQQPQ  60
QQQQQSQQQQ YPMCQVDDCK ADLSNAKDYH RRHKVCEMHS KAAKALVSRN MQRFCQQCSR  120
FHPLQEFDEG KRSCRRRLAG HNRRRRKTQP DAAAAQAFLL SEDDVAGKSA GLLKLLQVLS  180
QLQAASALEK ANAVQERDLA LEYLRRAVSV STALGDCSKE GNGFGQKPEV KSPYDAQVLS  240
ALPGLPLLDA FSVLLQNNLK AQAKELPAPV VSQPLQNGTD YLPRGSHAPP PPTSRPAHSV  300
IEVDGPSGHK PFPFQSPVAA AVNKAAVAPD SRDAVRPSLL GLLGARDRPP SPAVPPTSFI  360
QAGHSQQSSE SQSGSEQSPD SSYADWQERT GRISFKLFDR NPGDFPQLLR AQILEWLSHV  420
PSDMESYIRP GCVVLAIFLS MPNSAWQKLC NDLLGNLKRL IDSSPTDFWN KGRILVQVCD  480
QSAYVVDGKV QAVSLKSRDF PEILAVRPLA AVRNEETRFL VHGVDLAGAD TRIYCAFHDE  540
YNLQSWSEID ANEEDAEGSL CFTHTPCESI GRCFIEVERN GGSSFAPVLV ADNAICDEVR  600
SLEEDIEIAS SRAGAMADSC AFPEEYSVAF VDLVELAVEH ETSRFLHELG WVFQKQHWQL  660
MKKQDHCDLR SSTMKWLLMF AVEREWCAVV KALLDTLYSF QSTGKVEDVA DVLESVNLLH  720
RATSRNSITM VEFLLTYQSP VAKRKESYVF SAATAGPAGL TALHVAACMI GADRVVSALT  780
SDASQVGLQS WNSARDINGQ SPFDCALSHG NFTYIQLVWS KIAASRGKSI PSQATNWIQN  840
ALSIELPPWP SSSTQTPGGS KVLLPASCGS ECVAAAAGQH PVRQNFAGIR GPMYRPFILS  900
MVAIAAVCVC VCLLLKSPVE VRFISPFTWE SVQFGPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	73	147	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002961268.2	0.0	squamosa promoter-binding-like protein 1 isoform X1
TrEMBL	D8QNS0	0.0	D8QNS0_SELML; Uncharacterized protein
STRING	EFJ38807	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2595	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	7e-80	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	437670
Entrez Gene	9632778

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]