PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

437868

Common Name

MADS5-1, SELMODRAFT_450771

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

M-type_MADS

Protein Properties

Length: 146aa MW: 15337.7 Da PI: 10.3083

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
437868	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	37.8	2.5e-12	9	49	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 ++i+n+ r tf kR++g+ KAe L +LC+aev vi++ 437868 9 EFIKNDKSRRETFKKRLKGLKGKAEQLATLCNAEVGVIVIC 49 68************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.1E-12	1	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.2E-15	1	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	17.016	1	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-14	10	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MGRRKLPIEF IKNDKSRRET FKKRLKGLKG KAEQLATLCN AEVGVIVICD GKVQEAGFSG 60 TASPSAGSGS AAVDFKTIIS KYAMYFYHAY HTMALQRILH PDPGNNPAQV ANGGGGGGGG 120 GQLLDLNMPG GSLYPPCKVV GVTRR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	25	RRKLPIEFIKNDKSRRETFKKRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002961531.1	7e-98	uncharacterized protein LOC9657274
TrEMBL	D8QRK2	2e-96	D8QRK2_SELML; Type I MADS-domain transcription factor
STRING	EFJ36791	3e-97	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	8e-12	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	437868
Entrez Gene	9657274

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]