PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 438000
Common NameSELMODRAFT_438000
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family CO-like
Protein Properties Length: 449aa    MW: 49197 Da    PI: 4.7122
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
438000genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.19.8e-102766437
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
              r C+ ++++++++fC+ ++ +lCe+C  + H g       H
    438000 27 RPCDVCGRERAKWFCKADEAYLCENCDGSVH-GanavslrH 66
              78*************************9999.434555555 PP
2CCT68.32.1e-23399442144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  438000 399 REARVMRYREKRRTRLFSKKIRYEVRKLNAERRPRLKGRFVKRT 442
             9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-92471IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6652471IPR000315B-box-type zinc finger
PfamPF006431.9E-72767IPR000315B-box-type zinc finger
CDDcd000214.12E-92771No hitNo description
PfamPF062038.9E-18399441IPR010402CCT domain
PROSITE profilePS5101716.251399441IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEKASSTSKS SSNLAATAMA IAGRALRPCD VCGRERAKWF CKADEAYLCE NCDGSVHGAN  60
AVSLRHERFR MGPNGMLMKN VKRVSKFQLA EDISPTNSAA AVTAACAKDS HCPPRKKPRS  120
SRSHSLGSNS SKESGKVKAE PKSPKEYAAE FQPCQESSHE VPIFDPLLED FAASDDNSLG  180
CTVPCATPPD EDDEEMCFTV PDDCDLDGFL DSEADLGVMD GIISGTIEMD GIADLGDVLG  240
ESECKTFTHD SFGIDFPAIF HSPSPNSDGS VADAFDSADA VKVKTEEAEE LDKIKLEVDE  300
MLGFAFSSAS TVKEEEVEKK ITLKLDYEDV LNAWSDRGPF WTEGPRPQTV PDDSLFDPAS  360
TLDYGLVPDF CMESTEVEAV GQVPVVNFGE DRLTPQGGRE ARVMRYREKR RTRLFSKKIR  420
YEVRKLNAER RPRLKGRFVK RTNSTPHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119PRKKPRS
2409425RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961709.10.0zinc finger protein CONSTANS-LIKE 6
TrEMBLD8QSN10.0D8QSN1_SELML; Uncharacterized protein
STRINGEFJ369690.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-28B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]