PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

438933

Common Name

SELMODRAFT_438933

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 198aa MW: 22241.7 Da PI: 5.3562

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
438933	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.2e-06	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F +ks++ H+++H 438933 96 FVCEGCGKIFGSKSQYWGHQSVH 118 89******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.45E-5	94	122	No hit	No description
PROSITE profile	PS50157	11.468	96	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.40.10	2.1E-8	145	194	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57903	5.09E-10	145	195	IPR011011	Zinc finger, FYVE/PHD-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MELIDNNKKR KRTPIKQKKL DDIPETQETF HVENGDAEKT QQEDDTAKVA EQNEQAARNS 60 IDCQAQQSCG RLDTAGNHEQ DHHGEISLTP QANDRFVCEG CGKIFGSKSQ YWGHQSVHAK 120 KRRRREAIPE EKQEEAQTFS SLVGWLDEGC QECKISVLGN ELSICSWCEK EYHLSCVGMS 180 AGETLPPHWT CPACILL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	12	KKRKRT
2	119	124	KKRRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024524481.1	1e-145	remodeling and spacing factor 1 isoform X3
TrEMBL	D8R0J6	1e-145	D8R0J6_SELML; Uncharacterized protein
STRING	EFJ34984	1e-146	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	438933
Entrez Gene	9654120

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]