PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

440305

Common Name

SELMODRAFT_440305

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

CAMTA

Protein Properties

Length: 423aa MW: 47432.1 Da PI: 4.8397

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
440305	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	106.8	1.4e-33	6	105	3	106
CG-1 3 ke.kkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 +e + rwlk++e+++iL n++++ + l +++rp sgsl+L++rk vr frkDG++wkk +g +he+LK g+++vl+cyYa++ee+p+fqr +yw+L 440305 6 QEaCVRWLKPHEVCDILRNYQSYGFDLnsLPPNRPASGSLFLFDRKAVRCFRKDGHNWKK--EG----QAHERLKSGSIDVLHCYYARGEEDPNFQR-SYWML 101 45599***************9887765789**********************86..55....58**********************9.9** PP CG-1 103 eeel 106 e 440305 102 EGYI 105 9764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	44.532	1	143	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.7E-45	4	138	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.8E-30	8	103	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MRQIIQEACV RWLKPHEVCD ILRNYQSYGF DLNSLPPNRP ASGSLFLFDR KAVRCFRKDG 60 HNWKKEGQAH ERLKSGSIDV LHCYYARGEE DPNFQRSYWM LEGYIEQEKT NMHPPLTCII 120 MACSAYEHIV LVHYLQVHQG RESAYGASPE HPEPFSHSEH GDSSDHVEQM EQLFSKDSLL 180 SETQSGQGGN LMMEDRIDLN DILDSPDMFL GQKPLSPAVS LDMSGWKEVL RSYRENPTNG 240 PVKQEDSDAL EQRTTVDASP GQVKFDDGIM FKLSPEAIPS PKAIIEVLSQ PGLGRQPHTL 300 LEAQLRAATA ENAMKTAQSL SLRWRESVFS RPPAQNVLVD MGRSSRQEES DIKSLASFGP 360 WALAKFGNDD DAGALLEAAP SVSSSVWAAM DVDKDREETS NLPTPMELEM SAQFQRFSIT 420 DL*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MRQIIQEACV RWLKPHEVCD ILRNYQSYGF DLNSLPPNRP ASGSLFLFDR KAVRCFRKDG  60
HNWKKEGQAH ERLKSGSIDV LHCYYARGEE DPNFQRSYWM LEGYIEQEKT NMHPPLTCII  120
MACSAYEHIV LVHYLQVHQG RESAYGASPE HPEPFSHSEH GDSSDHVEQM EQLFSKDSLL  180
SETQSGQGGN LMMEDRIDLN DILDSPDMFL GQKPLSPAVS LDMSGWKEVL RSYRENPTNG  240
PVKQEDSDAL EQRTTVDASP GQVKFDDGIM FKLSPEAIPS PKAIIEVLSQ PGLGRQPHTL  300
LEAQLRAATA ENAMKTAQSL SLRWRESVFS RPPAQNVLVD MGRSSRQEES DIKSLASFGP  360
WALAKFGNDD DAGALLEAAP SVSSSVWAAM DVDKDREETS NLPTPMELEM SAQFQRFSIT  420
DL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024521642.1	3e-66	calmodulin-binding transcription activator 1
Refseq	XP_024537773.1	3e-66	calmodulin-binding transcription activator 1
TrEMBL	D8RAW3	0.0	D8RAW3_SELML; Uncharacterized protein
STRING	EFJ30383	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP562	15	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	2e-42	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	440305
Entrez Gene	9631273

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]