PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 440790
Common NameSELMODRAFT_440790
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 400aa    MW: 44192.4 Da    PI: 7.8172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
440790genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06294315426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              + Cr+f+r   C + ++C+F H+
   440790 294 PACRDFLR-NKCARSSSCRFVHP 315
              78******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.375481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6855482IPR000571Zinc finger, CCCH-type
PfamPF146080.0345980No hitNo description
PROSITE profilePS5010310.66288115IPR000571Zinc finger, CCCH-type
SMARTSM003561.188114IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549155183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4159181IPR000571Zinc finger, CCCH-type
PfamPF146080.45161180No hitNo description
SMARTSM003560.17189213IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.225193214IPR000571Zinc finger, CCCH-type
SMARTSM003560.03290316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864290317IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4294315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.202323349IPR000571Zinc finger, CCCH-type
SMARTSM003560.83324348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRTTNASGT SSGRRRGRSE EEEAGASGAG GDWDHPAAAL HRQQSMLVDG KRRSLSVPIC  60
KDFGRGRCSR PVHECRYAHP PPTVAVEGDQ VTICYDSLRD RCARGISCRY FHPPHHIRVA  120
TQEAVGIDPS PLGLELRASN LLLGPSPTSL ITISRPSIEV CRDFVRGRCK RESDECRFAH  180
HVPAAGDGDY AIVCQDFMRG RCERETCRYF HPPDHLRSRV KDIGGVPAAV SNPPRYDLPG  240
VYCSYPGYEN QAKRMRLDEV LLDKSSNLLL EAAGQSLPVF RPCSPPRNDQ DRLPACRDFL  300
RNKCARSSSC RFVHPAPYTQ VVDGYVTLCR DSLRGKCLRE ACRFHHPTQS AFQQRDNFES  360
SNTDNFYGSR AAVVAAPDSF GSLSPNEDDD NPGDQVGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2rpp_A7e-16532251387Muscleblind-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529961.10.0zinc finger CCCH domain-containing protein 28
TrEMBLD8REF60.0D8REF6_SELML; Uncharacterized protein
STRINGEFJ294360.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1013666
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]