PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

442185

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-YB

Protein Properties

Length: 122aa MW: 13411.1 Da PI: 5.2374

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
442185	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	171	1.3e-53	26	114	1	89
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 v+eq+rflPianvsrimkkvlP+nakiskdaketvqecvsefisf+t+easdkc+rekrktingddllwa++tlGfedy++plk+yl++ 442185 26 VKEQERFLPIANVSRIMKKVLPGNAKISKDAKETVQECVSEFISFITGEASDKCKREKRKTINGDDLLWAMGTLGFEDYIDPLKLYLQR 114 589************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.8E-49	24	114	IPR009072	Histone-fold
SuperFamily	SSF47113	1.46E-36	29	114	IPR009072	Histone-fold
Pfam	PF00808	2.3E-28	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.6E-17	60	78	No hit	No description
PROSITE pattern	PS00685	0	63	79	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.6E-17	79	97	No hit	No description
PRINTS	PR00615	1.6E-17	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MADYPGTPES SPHSDNESGG GNYSSVKEQE RFLPIANVSR IMKKVLPGNA KISKDAKETV 60 QECVSEFISF ITGEASDKCK REKRKTINGD DLLWAMGTLG FEDYIDPLKL YLQRGYAISS 120 L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	3e-47	21	114	1	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019900	1e-167	Selaginella moellendorffii CCAAT-box binding factor HAP3-like protein (HAP3B1) mRNA, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002973728.1	2e-81	nuclear transcription factor Y subunit B-3
Refseq	XP_002975778.1	2e-81	nuclear transcription factor Y subunit B-1
Swissprot	Q69J40	5e-61	NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBL	D8RRF4	4e-80	D8RRF4_SELML; CCAAT-box binding factor HAP3-like protein
TrEMBL	D8RXB7	4e-80	D8RXB7_SELML; CCAAT-box binding factor HAP3-like protein
STRING	EFJ23407	6e-81	(Selaginella moellendorffii)
STRING	EFJ25388	6e-81	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-61	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	442185

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]