PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

442384

Common Name

SELMODRAFT_442384

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRF

Protein Properties

Length: 818aa MW: 86038.5 Da PI: 8.5009

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
442384	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.3	3e-24	304	348	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++++k+C+rH+hrgr+rs+k e+ 442384 304 DPEPGRCRRTDGKKWRCSREVVPDQKYCDRHMHRGRNRSKKNAEN 348 79***************************************9876 PP
2	QLQ	58.7	1.8e-20	238	274	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FTa+Q+++L++Q+l++Ky++a++ vPpeLl +i++ 442384 238 GPFTANQWAELEHQALIFKYMMAGASVPPELLNPIRR 274 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-12	238	274	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.139	239	274	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.9E-15	239	273	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.816	304	348	IPR014977	WRC domain
Pfam	PF08879	3.7E-21	305	345	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MDLLHQNSSS PGLGICSSLG VLSPDNRMPS SYNSSGTSSG PLSPNLSSMK QCRSSSDVEV 60 DARDDGGPLK LARKDSFSYS RPSAAEQHQQ HQHSQQQQQQ HVGKLNMNSG GGGGAPAAAA 120 AANNNNGPAG SHSFSGDNGG SRIACSPTNS CLSDGVLVAS DAAAAANLMG GDTRMLRSDA 180 MASPGSSYNL AAANSNMRPF SYQSYQYPGA SGSPLMLAAA AAARGDHLGM QSAMSMRGPF 240 TANQWAELEH QALIFKYMMA GASVPPELLN PIRRSVALNN LASSHPSLRM GWGNFHLGIP 300 NNPDPEPGRC RRTDGKKWRC SREVVPDQKY CDRHMHRGRN RSKKNAENQA AAAAAAAAAN 360 SQSAAAAAAG GNTTTQSATN VGGVVQSSGL NQIHSSLRPP LGMNGQNHHQ HPSVGAAAAA 420 AASPFNSGTP TKSNFSSLPT GIPSGNNSGS SLQFPMQSLS GASPGGNKDY RYMSGMSKPE 480 LGLGPEQLLF SDSPLSSVHH QWQQNFQSKF PRLSSSSSNN SPSSPLYPQH QHHHHHHHHQ 540 QELRSLSGQQ HFEMPEASQI NHLSQPLLGP GYGGGPTAAA AAAGLEHVGR DCEEQPLRHF 600 FDDWPRQRDP STISWNDIED DQKQHQHQNQ QRAATPPTAV TAPGAGGTTT IPRTTSATQL 660 SISLPMSSSD FRVATSPRGK LSLSPLKLSM SRSEFEEDQL GGDPTRMGLG VGLGGGSRQQ 720 QQQQQQTWMQ SLEGGPLAEV LQSSTPRDHC KSSPGLNLLG DGWESSSRET SRMPSPTAVL 780 TKTPFGSFSD SSSNASSPRA VHAEALLGNA GSKQLTS*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MDLLHQNSSS PGLGICSSLG VLSPDNRMPS SYNSSGTSSG PLSPNLSSMK QCRSSSDVEV  60
DARDDGGPLK LARKDSFSYS RPSAAEQHQQ HQHSQQQQQQ HVGKLNMNSG GGGGAPAAAA  120
AANNNNGPAG SHSFSGDNGG SRIACSPTNS CLSDGVLVAS DAAAAANLMG GDTRMLRSDA  180
MASPGSSYNL AAANSNMRPF SYQSYQYPGA SGSPLMLAAA AAARGDHLGM QSAMSMRGPF  240
TANQWAELEH QALIFKYMMA GASVPPELLN PIRRSVALNN LASSHPSLRM GWGNFHLGIP  300
NNPDPEPGRC RRTDGKKWRC SREVVPDQKY CDRHMHRGRN RSKKNAENQA AAAAAAAAAN  360
SQSAAAAAAG GNTTTQSATN VGGVVQSSGL NQIHSSLRPP LGMNGQNHHQ HPSVGAAAAA  420
AASPFNSGTP TKSNFSSLPT GIPSGNNSGS SLQFPMQSLS GASPGGNKDY RYMSGMSKPE  480
LGLGPEQLLF SDSPLSSVHH QWQQNFQSKF PRLSSSSSNN SPSSPLYPQH QHHHHHHHHQ  540
QELRSLSGQQ HFEMPEASQI NHLSQPLLGP GYGGGPTAAA AAAGLEHVGR DCEEQPLRHF  600
FDDWPRQRDP STISWNDIED DQKQHQHQNQ QRAATPPTAV TAPGAGGTTT IPRTTSATQL  660
SISLPMSSSD FRVATSPRGK LSLSPLKLSM SRSEFEEDQL GGDPTRMGLG VGLGGGSRQQ  720
QQQQQQTWMQ SLEGGPLAEV LQSSTPRDHC KSSPGLNLLG DGWESSSRET SRMPSPTAVL  780
TKTPFGSFSD SSSNASSPRA VHAEALLGNA GSKQLTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974366.1	0.0	growth-regulating factor 6 isoform X2
TrEMBL	D8RSZ9	0.0	D8RSZ9_SELML; Uncharacterized protein
STRING	EFJ24588	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP460	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-43	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	442384
Entrez Gene	9657380

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]