PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

443825

Common Name

SELMODRAFT_443825

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 215aa MW: 24804.3 Da PI: 10.1192

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
443825	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	51	99	1	49
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 e+e+kr+ r+q+NR +A sRqRKk ++ Le k+ Le+ ++L + + 443825 51 EEEVKRQSRLQRNRQSAWQSRQRKKWYVTGLEAKCRLLEGRCTQLEQSV 99 789************************************9999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	2.1E-9	51	90	IPR004827	Basic-leucine zipper domain
SMART	SM00338	5.9E-9	51	115	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.484	53	116	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.8E-11	54	112	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.1E-13	55	114	No hit	No description
CDD	cd14704	3.99E-21	56	106	No hit	No description
PROSITE pattern	PS00036	0	59	73	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTVLSDVELS DLFVGVDDDS WGRFVDEVLL SCSDPDDEQQ QQQQQQRQHD EEEVKRQSRL 60 QRNRQSAWQS RQRKKWYVTG LEAKCRLLEG RCTQLEQSVR FVSTENVVLR QEVSRLNKAA 120 KSGVAEPAVL VKGSLPLEFL SRDLSCLVNL VTLLILVWCQ IPITLVGRDQ HTPLHHPHHK 180 MKAATTRRRR RGRSRRRSRR LIANGCGHLD WIPP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	198	RRRGRSRRRSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC158183	1e-125	Selaginella moellendorffii clone JGIASXY-5D8, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002978316.1	1e-155	bZIP transcription factor 50
TrEMBL	D8S4P4	1e-154	D8S4P4_SELML; Uncharacterized protein
STRING	EFJ20973	1e-154	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5468	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-10	bZIP family protein

Link Out ? help Back to Top
Phytozome	443825
Entrez Gene	9653107

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]