PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

444176

Common Name

SELMODRAFT_444176

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 400aa MW: 43547.3 Da PI: 7.9969

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
444176	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.2	4.1e-09	211	258	14	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 R +A+rsR RK+++i eLe v L++e + L ++ l+ + +l 444176 211 RQSAQRSRVRKLQYIHELEGNVSDLQNEVSGLSTQVALLEHQRLALHL 258 99**********************************999999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-8	202	262	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.31E-18	204	253	No hit	No description
Pfam	PF00170	1.5E-6	209	254	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.03E-8	210	256	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.8E-10	211	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSSSQLGRSD KSSSRCVNWG HSMALNHLPP KSPAIPSSTS SSQPCVGPPY PGCVVRVPGY 60 GAAAVAHHHR RSPSASFVPD VEPSWLEELL DSPKAPERPS RASHRRSASD SITFLEAPSN 120 LRKIDDIAEE DECYFDREEQ QLAAMFSDVV QISDGGWSQQ DRRAPHPFRT FPGDLSYVGG 180 SRMGNDAEQQ HDNEQSQLQG DQSADSKRSK RQSAQRSRVR KLQYIHELEG NVSDLQNEVS 240 GLSTQVALLE HQRLALHLDN AALKQNVAGL AQDARIKDAH NEALKKEIQR LRFLKQQQQR 300 LRQQLALASS AAGNNVETTT TTTTTTTKHV RRASAGSVQD LGSSAAADVL DYSFVKFVEK 360 TDSPVLRSSC TMAGNGKSLE VGASRLSGAP PGFIVHNHL*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSSSQLGRSD KSSSRCVNWG HSMALNHLPP KSPAIPSSTS SSQPCVGPPY PGCVVRVPGY  60
GAAAVAHHHR RSPSASFVPD VEPSWLEELL DSPKAPERPS RASHRRSASD SITFLEAPSN  120
LRKIDDIAEE DECYFDREEQ QLAAMFSDVV QISDGGWSQQ DRRAPHPFRT FPGDLSYVGG  180
SRMGNDAEQQ HDNEQSQLQG DQSADSKRSK RQSAQRSRVR KLQYIHELEG NVSDLQNEVS  240
GLSTQVALLE HQRLALHLDN AALKQNVAGL AQDARIKDAH NEALKKEIQR LRFLKQQQQR  300
LRQQLALASS AAGNNVETTT TTTTTTTKHV RRASAGSVQD LGSSAAADVL DYSFVKFVEK  360
TDSPVLRSSC TMAGNGKSLE VGASRLSGAP PGFIVHNHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002979367.1	0.0	basic leucine zipper 6
Refseq	XP_024519851.1	0.0	basic leucine zipper 6
TrEMBL	D8S7L3	0.0	D8S7L3_SELML; Uncharacterized protein
STRING	EFJ19775	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-20	bZIP family protein

Link Out ? help Back to Top
Phytozome	444176
Entrez Gene	9634098

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]