PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

444777

Common Name

SELMODRAFT_444777

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

DBB

Protein Properties

Length: 357aa MW: 38352.4 Da PI: 8.2234

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
444777	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.5	4.2e-06	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e+ C ++ lC++C + H H +vp 444777 4 QCDGCESAEAVVVCCADEAALCRECDIQVHDAnklagkHHRVP 46 7*****************************5478899977666 PP
2	zf-B_box	31.9	2.7e-10	54	85	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ +++k + +fC +++ llC++C +++Hk 444777 54 TSCDICQDKTAYFFCLEDRALLCHNCDMSIHK 85 68*****************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.2E-9	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.983	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.46E-8	3	47	No hit	No description
PROSITE profile	PS50119	9.556	51	98	IPR000315	B-box-type zinc finger
SMART	SM00336	5.3E-11	51	98	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-8	54	94	IPR000315	B-box-type zinc finger
CDD	cd00021	3.29E-9	54	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MKVQCDGCES AEAVVVCCAD EAALCRECDI QVHDANKLAG KHHRVPLFRP PTRTSCDICQ 60 DKTAYFFCLE DRALLCHNCD MSIHKLTAST SNHRRFLVTG VAASLHTLSG QAPATSPGTP 120 PPKSSHAVPN SNSHSRASKS TKRREHRDHA AASDARRHCQ SSPQTSTSTS TTSTATVITG 180 SNTDNSKSCQ VPGVRKPAAV VTTLPVAPPP PPPPPPPPGD GSRKTSIFEF LTEAVPGWKC 240 DELLNLPDSS SLASSYTFDP KIDANFAWPS ANVSRDQIYF RSVPQMDKLP AGFNATKVVG 300 DPAALKLKTK PGIFLLPEPD DAFLVPDLGL HSAPELPPAV KRRRTYSELD NIFLSR*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MKVQCDGCES AEAVVVCCAD EAALCRECDI QVHDANKLAG KHHRVPLFRP PTRTSCDICQ  60
DKTAYFFCLE DRALLCHNCD MSIHKLTAST SNHRRFLVTG VAASLHTLSG QAPATSPGTP  120
PPKSSHAVPN SNSHSRASKS TKRREHRDHA AASDARRHCQ SSPQTSTSTS TTSTATVITG  180
SNTDNSKSCQ VPGVRKPAAV VTTLPVAPPP PPPPPPPPGD GSRKTSIFEF LTEAVPGWKC  240
DELLNLPDSS SLASSYTFDP KIDANFAWPS ANVSRDQIYF RSVPQMDKLP AGFNATKVVG  300
DPAALKLKTK PGIFLLPEPD DAFLVPDLGL HSAPELPPAV KRRRTYSELD NIFLSR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002981227.1	0.0	B-box zinc finger protein 20
Refseq	XP_024541776.1	0.0	B-box zinc finger protein 20
Refseq	XP_024541777.1	0.0	B-box zinc finger protein 20
TrEMBL	D8SCW9	0.0	D8SCW9_SELML; Uncharacterized protein
STRING	EFJ17928	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1804	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.2	4e-28	DBB family protein

Link Out ? help Back to Top
Phytozome	444777
Entrez Gene	9657997

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]