PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

447019

Common Name

SELMODRAFT_447019

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HB-other

Protein Properties

Length: 1496aa MW: 166440 Da PI: 4.9008

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
447019	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.8e-19	19	74	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+++++++yps+ r+eL++kl+Lt+rq ++WF+ rR k++k 447019 19 TKRKMKTPSQLEILERVYAEDKYPSEVVRAELSTKLSLTDRQLQMWFCHRRLKDRK 74 58999*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-16	5	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.532	15	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-15	16	75	IPR009057	Homeodomain-like
SMART	SM00389	3.1E-15	17	79	IPR001356	Homeobox domain
CDD	cd00086	1.76E-13	20	74	No hit	No description
Pfam	PF00046	2.2E-16	20	74	IPR001356	Homeobox domain
SMART	SM00571	3.3E-14	524	583	IPR018501	DDT domain
PROSITE profile	PS50827	14.678	524	583	IPR018501	DDT domain
Pfam	PF02791	1.7E-14	526	580	IPR018501	DDT domain
Pfam	PF05066	1.3E-14	711	779	IPR007759	HB1/Asxl, restriction endonuclease HTH domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1496 aa Download sequence Send to blast
MEGDDKPRKG EDKDKGLNTK RKMKTPSQLE ILERVYAEDK YPSEVVRAEL STKLSLTDRQ 60 LQMWFCHRRL KDRKGDEGGA PPGAPAATSS KKQKRKKDKE AATGAGGAAL LLLPPPPPLP 120 PNPSPASMLG AAVDLPDAKV AAVAAPAGGE EVAKATTMTT KKEGGGKKRS AAAMAAEELK 180 REREVITLVE QQLGEPIRED GPVLGREFDP LPPGPFDTPI DSSTFSLNAA ELKAPGAPEL 240 GSSRRTSPLT SSRTIPREHQ FIPEHPTGAQ FQPCKLERDG KGKAQQSSSS LTDARVPNLS 300 LNFLPHGDAD AGVEEQLLKP SHVVIPEMPE PPQPGSSKKR KVQSDDAKLA RELEAQEKKL 360 KREAEKQEAA RRKREEQERK EIEKINRERQ RELEKINRER QREEERHQRE QKKEQDRLER 420 LAQKEQQRLE KLRLKEEVRR QKEAAKLQAA YERATAKKLA KLSTGLMDDE QLELMQMGAF 480 VQGLVSGDME GGSAFDPSKV ELKKYPPASV RMKKVLGVSP WDSVQNVSNL LMVWGFLTTF 540 SDAIGLWPFT VDELVQGLHD FDSRLLNETY IALLRTLIRD VEDAAQAAAS GTAGSQHAIA 600 VAAGGHPQIV EAAYTWGFDI QEWGQHMSPL TWPEILRQFA LAAGYGPRWK KKTQSPDAKP 660 DCIEIHDGHN ANAIATLRSG AAAVNAVALM RGKHGTRLKV RKGQTPKLTP GTVKYAAFHV 720 LSIQGSKGLT ILELTDRIQK SGLRDLSSSK TPEASISAAL SRDTYLFERV APSTYCVRSP 780 FRRDPDDAED VLQAALERTY LYQTRQLDPE KADEDVEDAE EESEGEEHEV EEAEHESEHM 840 DAEVERAEQH QQHEDAREHD ESGHASESYE TPRRGKVILR LKTGKPQDSA GEATATAAAG 900 TAESFETETP AAVAAVAALA DSKDDAVRHL RPPPDALRKV DNDDEMEIDE SQALDALMAC 960 LDTRGAREAS LYNILTHIGG PVRKAMKSLA QSRAYVESSK GKAEGSPSSG VFGPSDASPE 1020 VPSAIPVELG RSTLEIQHAM DRFKDLDRWL WNRCLARGGK NLKALSLGNK RDVEMLATCE 1080 LCHGLYWPDE NHCPYCHAMV ESSKFSSHVR ECESKLEAKQ GIGYQLLPSR LQLLKQLLLS 1140 VEVAVPAEAF KDSWTSDSRR IWCSNVKAAS SSSELLEALT ELESCVDENW ISSSFETAEK 1200 ALSTTALGSN SRRKNLPWIP QTTAAVALRL SAFDAAIAFS TEQRQQLEET YQNSDHGFHR 1260 GTADEAAPNA NEFAASPQGT SSPDSGSPLE VQNGHVRMRS PQHHRSSYLE EQHEEEDNQQ 1320 QEVEKQQQME QQQPGRGRLL FRFPGRNVEH RQQAQAGASG GGGEMDESSD EDDEEGQGWE 1380 RQGSDEHSYE DDQQHHHQQH HHHQQQEEEE EDEEEGQQAP QHFYDRQEQE EINSMIMGEE 1440 ESYDEEEEEE GEELHRQEQQ QRQQHHGQHH GDYEEEEEVE EEEVELEEEL SEESS*

Sequence ? help Back to Top

Protein Sequence Length: 1496 aa Download sequence Send to blast

MEGDDKPRKG EDKDKGLNTK RKMKTPSQLE ILERVYAEDK YPSEVVRAEL STKLSLTDRQ  60
LQMWFCHRRL KDRKGDEGGA PPGAPAATSS KKQKRKKDKE AATGAGGAAL LLLPPPPPLP  120
PNPSPASMLG AAVDLPDAKV AAVAAPAGGE EVAKATTMTT KKEGGGKKRS AAAMAAEELK  180
REREVITLVE QQLGEPIRED GPVLGREFDP LPPGPFDTPI DSSTFSLNAA ELKAPGAPEL  240
GSSRRTSPLT SSRTIPREHQ FIPEHPTGAQ FQPCKLERDG KGKAQQSSSS LTDARVPNLS  300
LNFLPHGDAD AGVEEQLLKP SHVVIPEMPE PPQPGSSKKR KVQSDDAKLA RELEAQEKKL  360
KREAEKQEAA RRKREEQERK EIEKINRERQ RELEKINRER QREEERHQRE QKKEQDRLER  420
LAQKEQQRLE KLRLKEEVRR QKEAAKLQAA YERATAKKLA KLSTGLMDDE QLELMQMGAF  480
VQGLVSGDME GGSAFDPSKV ELKKYPPASV RMKKVLGVSP WDSVQNVSNL LMVWGFLTTF  540
SDAIGLWPFT VDELVQGLHD FDSRLLNETY IALLRTLIRD VEDAAQAAAS GTAGSQHAIA  600
VAAGGHPQIV EAAYTWGFDI QEWGQHMSPL TWPEILRQFA LAAGYGPRWK KKTQSPDAKP  660
DCIEIHDGHN ANAIATLRSG AAAVNAVALM RGKHGTRLKV RKGQTPKLTP GTVKYAAFHV  720
LSIQGSKGLT ILELTDRIQK SGLRDLSSSK TPEASISAAL SRDTYLFERV APSTYCVRSP  780
FRRDPDDAED VLQAALERTY LYQTRQLDPE KADEDVEDAE EESEGEEHEV EEAEHESEHM  840
DAEVERAEQH QQHEDAREHD ESGHASESYE TPRRGKVILR LKTGKPQDSA GEATATAAAG  900
TAESFETETP AAVAAVAALA DSKDDAVRHL RPPPDALRKV DNDDEMEIDE SQALDALMAC  960
LDTRGAREAS LYNILTHIGG PVRKAMKSLA QSRAYVESSK GKAEGSPSSG VFGPSDASPE  1020
VPSAIPVELG RSTLEIQHAM DRFKDLDRWL WNRCLARGGK NLKALSLGNK RDVEMLATCE  1080
LCHGLYWPDE NHCPYCHAMV ESSKFSSHVR ECESKLEAKQ GIGYQLLPSR LQLLKQLLLS  1140
VEVAVPAEAF KDSWTSDSRR IWCSNVKAAS SSSELLEALT ELESCVDENW ISSSFETAEK  1200
ALSTTALGSN SRRKNLPWIP QTTAAVALRL SAFDAAIAFS TEQRQQLEET YQNSDHGFHR  1260
GTADEAAPNA NEFAASPQGT SSPDSGSPLE VQNGHVRMRS PQHHRSSYLE EQHEEEDNQQ  1320
QEVEKQQQME QQQPGRGRLL FRFPGRNVEH RQQAQAGASG GGGEMDESSD EDDEEGQGWE  1380
RQGSDEHSYE DDQQHHHQQH HHHQQQEEEE EDEEEGQQAP QHFYDRQEQE EINSMIMGEE  1440
ESYDEEEEEE GEELHRQEQQ QRQQHHGQHH GDYEEEEEVE EEEVELEEEL SEESS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024517255.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
TrEMBL	D8SW30	0.0	D8SW30_SELML; Uncharacterized protein
STRING	EFJ11353	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-113	homeobox-1

Link Out ? help Back to Top
Phytozome	447019
Entrez Gene	9629765

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]