PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 448225
Common NameSELMODRAFT_448225
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 1256aa    MW: 141535 Da    PI: 7.1735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
448225genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.69.2e-083151526
             --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
              Cr+f+r G C++G+ CkF H 
   448225 31 VCRDFQR-GSCRFGSHCKFVHR 51
             7******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6522653IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-52752IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-53151IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-53151IPR000571Zinc finger, CCCH-type
PfamPF003106.8E-5393442IPR017932Glutamine amidotransferase type 2 domain
Gene3DG3DSA:3.60.20.103.9E-4441481IPR029055Nucleophile aminohydrolases, N-terminal
PfamPF003101.0E-23481549IPR017932Glutamine amidotransferase type 2 domain
Gene3DG3DSA:3.60.20.106.4E-20482549IPR029055Nucleophile aminohydrolases, N-terminal
SuperFamilySSF562351.39E-15482549IPR029055Nucleophile aminohydrolases, N-terminal
SuperFamilySSF513952.38E-8651761No hitNo description
PfamPF048981.5E-8651756IPR006982Glutamate synthase, central-N
PROSITE profilePS501819.127879928IPR001810F-box domain
SuperFamilySSF813831.44E-8880928IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.1E-8881919No hitNo description
PfamPF006464.4E-6883919IPR001810F-box domain
SMARTSM002563.2E-5885925IPR001810F-box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005515Molecular Functionprotein binding
GO:0015930Molecular Functionglutamate synthase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1256 aa     Download sequence    Send to blast
MSTRSGHIAD SSPTHTRHSD RILVGSTSGV VCRDFQRGSC RFGSHCKFVH RQVADPVSSN  60
RNVRTVTSGP RILDTMANAE RPSPTTPRVR AMPSSSSPEQ QGNEDKGVPQ GFRLKRGMAP  120
GVESVAPVVP DPAEETQEEF RKAILQYATQ MEKKMHRGVS LQACSLGLLV RHIKRCPDIS  180
PALKSLLHSR IDNISLEPCS VTYQHKCHLD EEAALQHYSK FIDEALSMLE EEEALEDLRA  240
SIKKVKDKSA VAPSVAPSTR CFEASVNSVA STLQPRRRRA SKIKAAEEEN LSAEEEEYFS  300
ADEIFEDESM ILRLKLLHLQ QLAKYVVSMA ALMYEYVSLN LAHVNPLLKQ LEKIKNELKE  360
ALNNLWPTKV SKEIVECKYF VSLLQNWEAF LPLMRSGQSP EATLMILVPE AYKNHCPTSI  420
QRLLIFTSIT KEAWDGFALL LMELLMRSGR TREETLMILV PEAYKNHPTQ VIDFYEYYTG  480
QMMELLMRSG GTREETLMIL VPEAYKNHPT QVIDFYEYYT GQMEAWDGPA LLLFSDGRTV  540
GACLDRNGLL DIGKRRMEWL LRLVLISSPK VVYRPWDDDS HRLELWKGKN KNMLCICDNV  600
LRLQLNRLWT LTSSFRDSNF RASGYSSEGV QMVMRTDFAG NKSSHYPLRE VSLDMNTGKR  660
ENLLEEKAEN AAQLKLVSPV LNEGELETLK TDPVLKASTI PTFFDISNGL EGSLSSAGQA  720
EGADEAVKPA IPMLLVVHHH LIQNGLRASA SLILPNAFVH RLLGLWSTIV SIWEFSCIKV  780
SKLLHRAVRE KNESAYAVYE LPTVLRSRIS PHLFLLQANV EIIHVGGLGL TSVLKFYQLQ  840
PGRAHNVVCF EQHPDKWKTS AGETFSAGTR LSYQGGVRAG RMERLTEDLL LRVFASLELD  900
DLGRLRCVCR SWDSAITSHE FAKQWKGRDE VCCVLRTKDS IHREVWFPGS GARRSTGLNP  960
GPRGCFSIGV SSSHGLVCGL LPEEGRYWNT PDTAWKFVVG NPLTNKWRRL PPIDIPSRPL  1020
YTMERIHLQA DPSKGSYKLV ITYSEDGVDY QVIYQARQYD SESRVWTSAV PFIGEHDCAN  1080
TKIDGSMIGS AGLQYPPYFL MGYNPDSMAW SCHKHFVGGR DPTPLNESVY KEYKLDSTTL  1140
CDVLRWRGRN FMVTHSFSCV VLWELDTVAG EWKVLSSRRY KELYGRMPSR ENSEIQALLV  1200
GSTIVFSDCY ETPYVYAPYA YNLEDSTWHS STCCASADTD TALGCAFIPS FNIEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1llw_A1e-30477778272656Ferredoxin-dependent glutamate synthase
1llz_A1e-30477778272656Ferredoxin-dependent glutamate synthase
1lm1_A1e-30477778272656Ferredoxin-dependent glutamate synthase
1ofd_A1e-30477778272656FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2
1ofd_B1e-30477778272656FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2
1ofe_A1e-30477778272656FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2
1ofe_B1e-30477778272656FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD8T5Q20.0D8T5Q2_SELML; Uncharacterized protein
STRINGEFJ079430.0(Selaginella moellendorffii)
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]