PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 45667
Common NameSELMODRAFT_45667
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 294aa    MW: 31367.7 Da    PI: 8.8411
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
45667genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-101136227
             -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
             ++  C +++rtG C +G +CkF+H+p
    45667 11 GEQDCVYYMRTGLCAFGMSCKFNHPP 36
             6789********************97 PP
2zf-CCCH38.51.9e-125581127
             --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
             +++++C++f++tGtCk+G++Ck+ H++
    45667 55 PGQPECQYFLKTGTCKFGSTCKYDHPR 81
             5789*********************96 PP
3zf-CCCH39.96.8e-13102127227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
              ++++C +++rtG CkyG +CkF+H++
    45667 102 GEKECAYYMRTGSCKYGVTCKFHHPQ 127
              7899********************97 PP
4zf-CCCH41.13e-13205230227
              -S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
              + ++C+++++tG CkyG++C+F+H++
    45667 205 GVAECQYYLKTGDCKYGASCRFHHPR 230
              7899********************96 PP
5zf-CCCH34.53.5e-11252275326
              S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +C+++ r+G+Ck+G++CkF H+
    45667 252 VQPCSYYIRFGICKFGPTCKFDHP 275
              579********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-5936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582937IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-71136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-51337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-41535IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-65481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.2485482IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-105681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65883IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-56081IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5106126IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6203230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187203231IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10205230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-6207232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-6209230IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446249277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6250276IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-8252275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4253274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
GGGGPYPERP GEQDCVYYMR TGLCAFGMSC KFNHPPNRKL AAAIARGKGE YPERPGQPEC  60
QYFLKTGTCK FGSTCKYDHP RDKAGIQSRV QLNIVGLPYR PGEKECAYYM RTGSCKYGVT  120
CKFHHPQPAV VPSIYAAAAA AAAAGASQPG TPNAATGTPQ HFQPGSPTTA DYSPFVPGSP  180
TMGLPAGLRE HKGGGGGDAF PERPGVAECQ YYLKTGDCKY GASCRFHHPR DRISASAPTM  240
LSPMGLPLRT GVQPCSYYIR FGICKFGPTC KFDHPLAAIY GFGSEVPASP PSIH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024522712.10.0zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ2R4J47e-99C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLD8TCC90.0D8TCC9_SELML; Uncharacterized protein (Fragment)
STRINGEFJ056930.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.17e-90zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]