PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

46107

Common Name

MICPUCDRAFT_46107

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C3H

Protein Properties

Length: 1092aa MW: 114196 Da PI: 4.992

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
46107	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.7e-06	1046	1066	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ff C++Gd CkF+H 46107 1046 ICAFFNTPKGCRHGDACKFSH 1066 6******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50864	9.1	287	380	IPR000770	SAND domain
SuperFamily	SSF63763	1.74E-6	302	356	IPR010919	SAND domain-like
Gene3D	G3DSA:3.10.390.10	2.3E-6	302	357	IPR010919	SAND domain-like
Pfam	PF01342	1.2E-6	304	376	IPR000770	SAND domain
Gene3D	G3DSA:1.20.930.10	5.9E-10	482	580	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	1.2E-7	482	576	IPR017923	Transcription factor IIS, N-terminal
Pfam	PF08711	5.2E-5	506	566	IPR017923	Transcription factor IIS, N-terminal
PROSITE profile	PS50103	12.22	1041	1069	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence Send to blast
MDAEETARDD DVAEPEATTP ASVREREDEP SAADEAEAAI DDDDDDDDRA RASSPLADVE 60 MDDAGPSGDG PEDDDEPQEE EDLDDIDGDT ASESSEDDEA DRAEDAMEED EGEDDDEELE 120 DDAEDIADAP PEPTGRANVE EDPKVETPSA TTISDAANED VDAEDILAEI SLAGRQELDA 180 CAKSLLASGS KDVSDDVAAA FATKHDLKPH EIKVAVSHLY DAHAEKIAVA AAAAASASPV 240 SAAAPIVLDA SPAKPAAAKK NPAATAHGGL PGKPLAAASS PSAKPATATV TFATKTGISA 300 EVRVDLVCGP ARGTLVLPKG YKQKQEYVVY PDGRKISPAA FERDGGKEKS KSWKNSCIVV 360 TSDAFNGKTF KRWVDATGYH PVGTEIEGAA APADEKKKKS KKSSKEKSKK AEEEDEEEVE 420 KSVFERNLEP LLDDAGGIKA IDMTGRFVWL MRNALKNAER SLVISVIHRT SKPIMRSFVD 480 GSDGVKVLYE WCAAARDTNK SSLVLKILKT LRKLPVTFAV LEKTPEFAKF VNKLRKYAPP 540 GKESEDLTIQ VQDNAMELKA KWVKMITAEN AAKEAAAAKK AAAAKAAAAP PVVGVKRDAA 600 AAAAAAATAA AAKRPRVDAV PTPPQPAVAK PTLNPKPAAP APTKIAAPAP SSTKIGSVAT 660 TTKVTTTKVT TTKVTTTISR PASSALSFGG INIRGAGFPS KPSGGDASKA TSAKPAKPAS 720 PPPPKFKYSK PTSARAKKGL SWAADTALEA VQFFFKDDAA AKPPSPPSIS RADADGGKDK 780 DDDENETEDD AEAMKKARQR QERELAAEAR AANLTRQRRL NEMRAIGSWR RPVTYVYPKD 840 VEIESGSEST EAKRMAQRVS RVPETTYAMA SLIPASPGEA PGEAPHDDAK TPAVPVVAAK 900 QQPQQQQQQQ QQQGSSMHQN QYASAQQQQQ HQQQGGQGGG FDANALQALL ASVQSGALKG 960 GGGGGGGGGG ASNGVAPLPP PPSGGNGGGY GGNPPMPRGR PPAAHHQQHQ QQRDQGQGQG 1020 QGQGQKGQGQ GGGFNDGWTP QQPGGICAFF NTPKGCRHGD ACKFSHIPGA PTPAPGNFPP 1080 KNPSSRYGAF R*

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence Send to blast

MDAEETARDD DVAEPEATTP ASVREREDEP SAADEAEAAI DDDDDDDDRA RASSPLADVE  60
MDDAGPSGDG PEDDDEPQEE EDLDDIDGDT ASESSEDDEA DRAEDAMEED EGEDDDEELE  120
DDAEDIADAP PEPTGRANVE EDPKVETPSA TTISDAANED VDAEDILAEI SLAGRQELDA  180
CAKSLLASGS KDVSDDVAAA FATKHDLKPH EIKVAVSHLY DAHAEKIAVA AAAAASASPV  240
SAAAPIVLDA SPAKPAAAKK NPAATAHGGL PGKPLAAASS PSAKPATATV TFATKTGISA  300
EVRVDLVCGP ARGTLVLPKG YKQKQEYVVY PDGRKISPAA FERDGGKEKS KSWKNSCIVV  360
TSDAFNGKTF KRWVDATGYH PVGTEIEGAA APADEKKKKS KKSSKEKSKK AEEEDEEEVE  420
KSVFERNLEP LLDDAGGIKA IDMTGRFVWL MRNALKNAER SLVISVIHRT SKPIMRSFVD  480
GSDGVKVLYE WCAAARDTNK SSLVLKILKT LRKLPVTFAV LEKTPEFAKF VNKLRKYAPP  540
GKESEDLTIQ VQDNAMELKA KWVKMITAEN AAKEAAAAKK AAAAKAAAAP PVVGVKRDAA  600
AAAAAAATAA AAKRPRVDAV PTPPQPAVAK PTLNPKPAAP APTKIAAPAP SSTKIGSVAT  660
TTKVTTTKVT TTKVTTTISR PASSALSFGG INIRGAGFPS KPSGGDASKA TSAKPAKPAS  720
PPPPKFKYSK PTSARAKKGL SWAADTALEA VQFFFKDDAA AKPPSPPSIS RADADGGKDK  780
DDDENETEDD AEAMKKARQR QERELAAEAR AANLTRQRRL NEMRAIGSWR RPVTYVYPKD  840
VEIESGSEST EAKRMAQRVS RVPETTYAMA SLIPASPGEA PGEAPHDDAK TPAVPVVAAK  900
QQPQQQQQQQ QQQGSSMHQN QYASAQQQQQ HQQQGGQGGG FDANALQALL ASVQSGALKG  960
GGGGGGGGGG ASNGVAPLPP PPSGGNGGGY GGNPPMPRGR PPAAHHQQHQ QQRDQGQGQG  1020
QGQGQKGQGQ GGGFNDGWTP QQPGGICAFF NTPKGCRHGD ACKFSHIPGA PTPAPGNFPP  1080
KNPSSRYGAF R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003054792.1	0.0	ult-like transcription factor
TrEMBL	C1MGK8	0.0	C1MGK8_MICPC; Ult-like transcription factor
STRING	XP_003054792.1	0.0	(Micromonas pusilla)

Link Out ? help Back to Top
Phytozome	46107
Entrez Gene	9680653

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]