PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462844418
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 88aa    MW: 9650.68 Da    PI: 7.5269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462844418genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-143280155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  462844418 32 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 80
               79****9888.8*********......44**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.5E-14288IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008479.5E-103280IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-183288IPR016177DNA-binding domain
CDDcd000182.07E-153288No hitNo description
SMARTSM003801.5E-203388IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-223388IPR001471AP2/ERF domain
PROSITE profilePS5103221.8523388IPR001471AP2/ERF domain
PRINTSPR003671.7E-83445IPR001471AP2/ERF domain
PRINTSPR003671.7E-87088IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MLFLDAMADS SQESSAGEMA AAPPRQSSST TSRYKGVVPQ PNGRWGAQIY ERHARVWLGT  60
FPDEEAAARA YDVAALRYRG REAATNFP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462844418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116062e-65AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
GenBankCP0126092e-65CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818627.19e-33AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9LS066e-28RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A3B6FIV49e-32A0A3B6FIV4_WHEAT; Uncharacterized protein
STRINGMLOC_7940.11e-33(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1870756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.17e-20ethylene response DNA binding factor 3