PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462844691
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 181aa    MW: 20416.9 Da    PI: 5.3103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462844691genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-15243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T+ E+ l++++ +++G++ W++Iar+++ gRt++++k++w++++
        462844691  2 TPNEERLILELRARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43
                     999***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.7E-9145IPR001005SANT/Myb domain
PROSITE profilePS5129422.501147IPR017930Myb domain
CDDcd001678.67E-12143No hitNo description
Gene3DG3DSA:1.10.10.602.7E-18244IPR009057Homeodomain-like
SuperFamilySSF466891.95E-12250IPR009057Homeodomain-like
PfamPF002493.3E-13242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTPNEERLIL ELRARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KRTMSPSSSS  60
SSLTYQSGYP DTPSIIGTEG QELHGGNNGC ITSILKGTPP DMEGYPMDQI WMEIEAPPEV  120
PSGNFDGDKL QDHAFISLPG LLPPSAAWDY YCPPADTCWK MDDETKMAPQ FGFSEGAGPC  180
Y
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462844691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321598.17e-86myb-related protein MYBAS2-like isoform X2
RefseqXP_021321600.11e-86myb-related protein MYBAS2-like isoform X4
SwissprotQ4JL764e-76MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A0A9IPI32e-93A0A0A9IPI3_ARUDO; Uncharacterized protein
STRINGSb08g018580.13e-85(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.15e-32myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]