PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462844979
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 124aa    MW: 13906.1 Da    PI: 10.5452
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462844979genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.2e-101223556
               HHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 35 kklgLterqVkvWFqNrRakek 56
               k+l+L+ rqV vWFqNrRa+ k
  462844979  1 KQLNLKPRQVEVWFQNRRARTK 22
               69******************98 PP
2HD-ZIP_I/II834.2e-271573491
  HD-ZIP_I/II 34 reLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                 ++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l
    462844979  1 KQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQREVAELR-AL 57
                 69****************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000862.25E-6125No hitNo description
PfamPF000461.7E-7122IPR001356Homeobox domain
PROSITE profilePS5007111.758124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-8127IPR009057Homeodomain-like
SuperFamilySSF466892.48E-8232IPR009057Homeodomain-like
SMARTSM003407.5E-232469IPR003106Leucine zipper, homeobox-associated
PfamPF021832.8E-112458IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
KQLNLKPRQV EVWFQNRRAR TKLKQTEVDC EFLKRCCETL TEENRRLQRE VAELRALKLV  60
AAPHHYARMP PPTTLTMCPS CERVASAGAG DEAARAAPRP AAPPGPWGPV PVRPVFVDGP  120
ARRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11624RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462844979
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424521e-113EU942452.1 Zea mays clone 1503625 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467488.12e-70homeobox-leucine zipper protein HOX1
SwissprotP466023e-46HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLC5WRJ54e-69C5WRJ5_SORBI; Uncharacterized protein
STRINGSb01g029000.17e-70(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.13e-44homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]