PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462845084

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YB

Protein Properties

Length: 102aa MW: 10916.9 Da PI: 6.7799

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845084	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	95	6.9e-30	1	56	42	97
NF-YB 42 fisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 fisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl+kyre+eg++ 462845084 1 FISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDPMRRYLNKYREVEGDR 56 9*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.2E-8	1	29	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-24	1	63	IPR009072	Histone-fold
SuperFamily	SSF47113	5.03E-20	1	66	IPR009072	Histone-fold
PRINTS	PR00615	5.9E-8	13	31	No hit	No description
PRINTS	PR00615	5.9E-8	32	50	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
FISFVTGEAS DKCHKEKRKT VNGDDVCWAF GALGFDDYVD PMRRYLNKYR EVEGDRAAAA 60 ASSRGGAADH PGSSSAAGPS GAGGHFMFGA MDRSDNNSSR QY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_B	2e-21	1	51	44	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-21	1	51	44	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845084

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB288038	1e-89	AB288038.1 Oryza sativa Japonica Group OsHAP3D gene for HAP3 subunit of HAP complex, complete cds.
GenBank	AP003246	1e-89	AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12.
GenBank	AP003266	1e-89	AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09.
GenBank	AP014957	1e-89	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-89	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	CT836573	1e-89	CT836573.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128I01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635864.1	2e-46	nuclear transcription factor Y subunit B-1
Refseq	XP_015635872.1	2e-46	nuclear transcription factor Y subunit B-1
Swissprot	Q75IZ7	1e-29	NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0D3EYD4	6e-45	A0A0D3EYD4_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N7B5	6e-45	A0A0E0N7B5_ORYRU; Uncharacterized protein
TrEMBL	I1NUZ7	6e-45	I1NUZ7_ORYGL; Uncharacterized protein
TrEMBL	Q942Y5	6e-45	Q942Y5_ORYSJ; HAP3 subunit of HAP complex
STRING	ORUFI01G46550.1	9e-46	(Oryza rufipogon)
STRING	OS01T0935200-01	9e-46	(Oryza sativa)
STRING	ORGLA01G0368700.1	9e-46	(Oryza glaberrima)
STRING	OBART01G43130.1	9e-46	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	1e-27	nuclear factor Y, subunit B5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]