PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462845269

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 376aa MW: 41175.6 Da PI: 6.3203

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845269	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.4	2.4e-16	212	264	4	56
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 k rr+ +NRe+A+rsR+RK+a++ eLe v++L++eN +L k+l e +++ 462845269 212 TKQIRRMVSNRESAQRSRRRKQAQLSELESQVEQLKGENATLFKQLTEANQQF 264 6899***************************************8888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-15	209	273	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.243	211	263	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-14	211	264	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.94E-12	213	264	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.8E-14	213	264	No hit	No description
CDD	cd14702	1.31E-18	214	265	No hit	No description
PROSITE pattern	PS00036	0	216	231	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
ADEDPSQPAS TSIRRGNLSP NAATELSTLP DFLLSAPLQK QGLLCRSRDT RQRRAGFSTE 60 QENSLSVSQH CNSTLPEKMK KCASELQLEA FIREDDRNEP SRRPQAGGLD EPGGGRNSSG 120 VFDRLPGIGF GDQNTMDGSS DDNLWWSGSI RSPQPASSAT VEWQRASISV AASPSGTSSP 180 NHRHESDSDS DSESLIDVEG APYARRTKSL ETKQIRRMVS NRESAQRSRR RKQAQLSELE 240 SQVEQLKGEN ATLFKQLTEA NQQFSTAVTD NRILKSDVEA LRVKVKMAED MVARSAVSCG 300 LGDLGLAPFL NSRKMCQALD MLTVTSLDLL GRDACFRRPT PARQVQNSPV QSTASLESLD 360 NRKSSEVTSC AVDMWP

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

ADEDPSQPAS TSIRRGNLSP NAATELSTLP DFLLSAPLQK QGLLCRSRDT RQRRAGFSTE  60
QENSLSVSQH CNSTLPEKMK KCASELQLEA FIREDDRNEP SRRPQAGGLD EPGGGRNSSG  120
VFDRLPGIGF GDQNTMDGSS DDNLWWSGSI RSPQPASSAT VEWQRASISV AASPSGTSSP  180
NHRHESDSDS DSESLIDVEG APYARRTKSL ETKQIRRMVS NRESAQRSRR RKQAQLSELE  240
SQVEQLKGEN ATLFKQLTEA NQQFSTAVTD NRILKSDVEA LRVKVKMAED MVARSAVSCG  300
LGDLGLAPFL NSRKMCQALD MLTVTSLDLL GRDACFRRPT PARQVQNSPV QSTASLESLD  360
NRKSSEVTSC AVDMWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	232	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845269

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965642.1	1e-125	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-100	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A0A9PGC1	1e-126	A0A0A9PGC1_ARUDO; Uncharacterized protein
STRING	Si007043m	1e-125	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	1e-23	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]