PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462845363

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 285aa MW: 32420.1 Da PI: 9.5371

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845363	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.8e-21	17	72	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k 462845363 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 72 678899***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.05E-21	6	74	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-23	11	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	14	74	IPR001356	Homeobox domain
SMART	SM00389	1.2E-19	15	78	IPR001356	Homeobox domain
CDD	cd00086	8.66E-19	17	75	No hit	No description
Pfam	PF00046	8.4E-19	17	72	IPR001356	Homeobox domain
PRINTS	PR00031	8.9E-5	45	54	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.9E-5	54	70	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MDFGDDVMEG SDGQRRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRMQLS RELGLEPRQI 60 KFWFQNRRTQ MKAQHERADN CFLRAENDKI RCENIAMREA LRNVICPTCG GPPVADDYFD 120 EQKLRMENAR LKEEASSHIL TRSSSFDGPV DDLISPLRSR LDRVSSLTSK YLGRPITQLP 180 PVQPLSMSSL DLSVGGLGSP ALGPKWMEFF PAIVSKARTI DVLVNGMAGR SESLVLVMTT 240 TNSRFHRYYV KVAQGLPTRV KNCACWCRAD VRGAARDVAG RPDAR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845363

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728523	1e-171	KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954072.1	1e-116	homeobox-leucine zipper protein ROC8
Swissprot	Q69T58	1e-103	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A3L6F4D2	1e-132	A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8
STRING	Si016483m	1e-116	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	2e-71	homeodomain GLABROUS 11