PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462845444

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

M-type_MADS

Protein Properties

Length: 101aa MW: 11154.1 Da PI: 10.9145

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845444	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.8	4.4e-26	48	97	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s 462845444 48 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 97 89*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-33	39	98	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	26.997	39	99	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.63E-32	41	98	No hit	No description
SuperFamily	SSF55455	6.54E-25	41	99	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	41	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-25	41	61	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-25	48	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-25	61	76	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.2E-25	76	97	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
TAADARRRST SPVILYCCCF GCGRGFQVGE VIQGSIMAGK RERIAIRRID NLAARQVTFS 60 KRRRGLFKKA EELSILCDAE VGLVVFSATG KLFHFASSRL I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-16	41	100	3	62	MEF2C
5f28_B	1e-16	41	100	3	62	MEF2C
5f28_C	1e-16	41	100	3	62	MEF2C
5f28_D	1e-16	41	100	3	62	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845444

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ009259	1e-76	FJ009259.1 Saccharum officinarum MADS box protein mRNA, complete cds.
GenBank	FJ608826	1e-76	FJ608826.1 Saccharum arundinaceum MADS box transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793840.1	1e-35	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793841.1	1e-35	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793842.1	1e-35	MADS-box transcription factor 47-like isoform X1
Refseq	XP_025793844.1	1e-35	MADS-box transcription factor 47-like isoform X2
Swissprot	Q5K4R0	1e-33	MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBL	A0A1E5VFN4	7e-35	A0A1E5VFN4_9POAL; MADS-box transcription factor 47
TrEMBL	A0A3L6SC43	1e-34	A0A3L6SC43_PANMI; Uncharacterized protein
STRING	Pavir.Ia04527.1.p	3e-35	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	7e-29	AGAMOUS-like 24

Publications ? help Back to Top
Lee S,Choi SC,An G Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J., 2008. 54(1): p. 93-105 [PMID:18182025] Lee S,Jeong DH,An G A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses. Plant Signal Behav, 2008. 3(7): p. 471-4 [PMID:19704489]