PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462845541
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 162aa    MW: 17520.2 Da    PI: 10.9408
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462845541genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000574668123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C  Cg++F +   L  H  +H
  462845541 46 FQCRTCGRRFATFQALGGHRTSH 68
               89**********99998888777 PP
2zf-C2H212.70.0003897119123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ Cg +F++   L  H+ +H
  462845541  97 HRCNTCGAVFPTGQALGGHMHRH 119
                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-43669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.83E-54572No hitNo description
SMARTSM003550.194668IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-94670IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6994673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576678.61E-595121No hitNo description
PfamPF139125.5E-1296121IPR007087Zinc finger, C2H2
SMARTSM003550.06797119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSTTASRPTA LEPANLLHLL SLSLSPASKV IVKQSKKRVH LMDGEFQCRT CGRRFATFQA  60
LGGHRTSHKR PRVRADGLDL LLGARPGKGA AAAKDVHRCN TCGAVFPTGQ ALGGHMHRHR  120
AAIFHVATTA LKTMPTMTTS GLSEDSDDAE ELLPTRTLFH FI
Cis-element ? help Back to Top
SourceLink
PlantRegMap462845541
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1340452e-52AC134045.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence.
GenBankAK0624912e-52AK062491.1 Oryza sativa Japonica Group cDNA clone:001-103-H07, full insert sequence.
GenBankAK1052262e-52AK105226.1 Oryza sativa Japonica Group cDNA clone:001-111-B01, full insert sequence.
GenBankAP0149672e-52AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAY3058662e-52AY305866.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
GenBankCP0126192e-52CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
GenBankCT8333222e-52CT833322.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980041.15e-55zinc finger protein ZAT12
TrEMBLA0A368SBJ91e-53A0A368SBJ9_SETIT; Uncharacterized protein
STRINGPavir.Ha00194.1.p1e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.15e-22C2H2 family protein