PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462845562
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 184aa    MW: 20004.2 Da    PI: 6.6172
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462845562genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31106164259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  462845562 106 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 164
                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3199166IPR003657WRKY domain
PROSITE profilePS5081132.742100166IPR003657WRKY domain
SuperFamilySSF1182901.02E-26102166IPR003657WRKY domain
SMARTSM007746.3E-37105165IPR003657WRKY domain
PfamPF031063.5E-26107164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MCDFFWLSPT DQGDLSDVVR ASLHQLPAVA TPDAATVYSH ESLGAHDLPE EEELLPLQGA  60
NSCCGDDLDR YGVHLQQRLV HGDGMGVTTP PGMGGRTSTS GEVVPSDLWA WRKYGQKPIK  120
GSPYPRGYYR CSSSKGCSAR KQVERSRTDP SMLVITYTSD HNHPWPTQRN ALAGSTRLVA  180
SSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-231071671880Disease resistance protein RRS1
5w3x_D2e-231071671880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462845562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187272e-77AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149662e-77AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-77CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546102e-77KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983519.15e-59probable WRKY transcription factor 14
TrEMBLK4AI301e-57K4AI30_SETIT; Uncharacterized protein
STRINGSi038537m2e-58(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-50WRKY DNA-binding protein 35