PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462845565

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 108aa MW: 13123.4 Da PI: 10.8665

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845565	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.0003	26	48	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp C k F ++ +L +H ++H 462845565 26 CPvkGCQKKFFSHKYLLQHRKVH 48 9999*****************99 PP
2	zf-C2H2	12.5	0.00045	55	78	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 kC+ C++ F+ + + H+r+H 462845565 55 KCSwkGCDMAFKWQWARTEHMRVH 78 79999*****************99 PP
3	zf-C2H2	14.3	0.00012	84	107	1	22
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 y+C+ C ++F+ s++ rH r+ 462845565 84 YVCHepGCQQTFRFVSDFSRHKRR 107 9********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.157	24	53	IPR007087	Zinc finger, C2H2
SMART	SM00355	2	24	48	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.2E-5	25	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	26	48	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.24E-11	40	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.9E-11	52	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	7.6E-4	54	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.967	54	83	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	78	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.86E-10	72	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.0E-11	78	106	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	27	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.517	84	108	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MKKRKQIVPK PLFTKQELSL HKRDICPVKG CQKKFFSHKY LLQHRKVHAD DRPLKCSWKG 60 CDMAFKWQWA RTEHMRVHTG DRPYVCHEPG CQQTFRFVSD FSRHKRRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6a57_A	8e-52	14	108	36	130	Lysine-specific demethylase REF6
6a58_A	8e-52	14	108	36	130	Lysine-specific demethylase REF6
6a59_A	8e-52	14	108	36	130	Lysine-specific demethylase REF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269\|PubMed:24280387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845565

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269\|PubMed:24280387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815151.1	3e-58	lysine-specific demethylase JMJ705-like
Swissprot	Q5N712	2e-57	JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBL	A0A0A9DU02	2e-58	A0A0A9DU02_ARUDO; Uncharacterized protein
TrEMBL	A0A2T7DCT2	2e-57	A0A2T7DCT2_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SIW8	1e-57	A0A3L6SIW8_PANMI; Uncharacterized protein
STRING	Pavir.J31927.1.p	2e-57	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11491	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	4e-51	relative of early flowering 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]