PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462845728
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 134aa    MW: 13891.5 Da    PI: 10.4509
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462845728genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY47.24.3e-15861232359
                EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnh 
  462845728  86 GYYRCSSNkGCPARKQVERSRADPTVLLVTYTFDHNHA 123
                7******99****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.66E-1285125IPR003657WRKY domain
PROSITE profilePS5081117.70686125IPR003657WRKY domain
PfamPF031068.4E-1386122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-1586125IPR003657WRKY domain
SMARTSM007748.4E-886124IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAAAADAEES PRAGAGQNKR ERDIPSPSSP LPAAKRSRRS VENKGGGPAA GGLVGVAQVR  60
AEAHQGLPLP AVSIISSGAR ALIAGGYYRC SSNKGCPARK QVERSRADPT VLLVTYTFDH  120
NHASPQPKSG GWDH
Cis-element ? help Back to Top
SourceLink
PlantRegMap462845728
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586172e-51KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.17e-33probable WRKY transcription factor 65
TrEMBLA0A0A9E6M07e-35A0A0A9E6M0_ARUDO; Uncharacterized protein
STRINGPavir.Eb03138.1.p7e-32(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-18WRKY DNA-binding protein 65