PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462845876

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

G2-like

Protein Properties

Length: 244aa MW: 27008.8 Da PI: 8.4869

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462845876	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl 462845876 29 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.738	26	86	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-31	26	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	29	84	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.79E-16	29	85	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-8	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-20	103	148	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MFPPGLIHHR QDGPAPGGGP SLVLTADPKP RLRWTADLHE RFVDAVAQLG GPEKATPKTI 60 LRTMGVKGLT LFHLKSHLQK YRLGKQSGKE DSEQTKDGKV SQEVKEALRA QMEVQRRLHE 120 QVEVQKRVQI RMDALQKYID TILESACKLV TEQFASSGFS ISEPDLPDLS PGGIMCGPND 180 TLSSSVFNQL SVSSIDSHSP GGKPSPSGIE GPPLLLQKSP ELKRRIWYIF DEPKFCENST 240 FDTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462845876

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065330	3e-95	BT065330.1 Zea mays full-length cDNA clone ZM_BFb0102O08 mRNA, complete cds.
GenBank	EU961925	3e-95	EU961925.1 Zea mays clone 239069 myb family transcription factor-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956514.1	1e-143	protein PHR1-LIKE 2 isoform X1
Swissprot	Q94A57	3e-63	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	K3ZV10	1e-142	K3ZV10_SETIT; Uncharacterized protein
STRING	Si030441m	1e-143	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-65	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]