PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846106
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARR-B
Protein Properties Length: 270aa    MW: 30126.3 Da    PI: 6.7784
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846106genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like29.12.1e-09208229122
    G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                kpr++W+ eLH++Fv av+qLG
  462846106 208 KPRVVWSVELHRKFVAAVNQLG 229
                79*******************6 PP
2Response_reg30.32.2e-1119722275
                  TCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEE CS
  Response_reg 22 gyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpii 75
                  g+  v+++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i
     462846106 19 GV-AVTTTGQAATALKLLREKKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 72
                  56.7999999999*****888778*******************87633.3356666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.2321143IPR001789Signal transduction response regulator, receiver domain
SMARTSM004484.4E-91139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.25E-201868IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-281972No hitNo description
CDDcd001568.94E-1819142No hitNo description
PfamPF000721.9E-71972IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521724.25E-2098147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.8E-28104162No hitNo description
Gene3DG3DSA:1.10.10.601.7E-9205233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MFQSSAHGLM CLDFMFCDGV AVTTTGQAAT ALKLLREKKD QFDLVISDVH MPDMDGFKLL  60
ELVGLEMDLP VISILPQLKI CKPTDYAKLL ILLNSETGHM YHVVLSANGE TQTVMKGITH  120
GACDYLLKPV RLEQLRTIWQ HVVRRRSCDA KNHGNENEDG GKKALNAEGE NGGANRNKRT  180
SRKGRDEDDD DDSDENSNEN GDSSSQKKPR VVWSVELHRK FVAAVNQLGI DSKCSCFTFL  240
LQNVHKSVIP WKWKPANPGR DDAELSCLTK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846106
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0620958e-62AB062095.1 Zea mays ZmRR9 mRNA for response regulator 9, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646983.11e-98PREDICTED: two-component response regulator ORR24
SwissprotA2X1N27e-99ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8056e-99ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A446W7B91e-100A0A446W7B9_TRITD; Two-component response regulator
STRINGTraes_6BS_B50BEBC7E.21e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-48response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]