PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846124
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Dof
Protein Properties Length: 311aa    MW: 32490.1 Da    PI: 9.9957
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846124genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-391373262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               +e a+kcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+ss
  462846124 13 PEPAIKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTQGGSLRNVPVGGGCRRNKRSS 73
               67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-33171IPR003851Zinc finger, Dof-type
PfamPF027012.4E-331671IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5991771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAERARLMRM PQPEPAIKCP RCDSTNTKFC YYNNYSLSQP RHFCKTCRRY WTQGGSLRNV  60
PVGGGCRRNK RSSKSSSSSS GASSSKPSSS SATRQLPGST TAGGGGAIAG GGIISPAGLG  120
SLSQQHHQYL PFLGSMHHQP NLGLAFPTGL PALGMQHVDA ADQFPVASGG ASLDQWRVHQ  180
QQPAQQQFPF LAAGGMLDLH QPRQQQQMYQ QLGLEAAANR GSSGAAAFTL GQASGATARQ  240
DGSMKLDDSK GQEMSLQRQY MAALRQGEGI WGGNAGGSGG ADGGGNGGVS WPMNIPGFRS  300
SSTGDDGTGL L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8709142e-99JN870914.1 Sorghum bicolor dof protein (dof3) gene, partial cds.
GenBankKC5824002e-99KC582400.1 Sorghum bicolor dof3 protein (dof3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791450.11e-105dof zinc finger protein DOF5.1-like isoform X1
TrEMBLA0A3L6TN101e-104A0A3L6TN10_PANMI; Dof zinc finger protein DOF3.6 isoform X2
STRINGPavir.J14669.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123012432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-39OBF-binding protein 3