PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462846232

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C2H2

Protein Properties

Length: 571aa MW: 63326.1 Da PI: 6.8166

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462846232	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00067	71	92	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H 462846232 71 KCTKCSREFCSSINFRRHTRVH 92 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MNASKRYNHI TDKDNAETAR DIMTTSGQIQ PLKIPDAVVA LAQAAAKANG ETEKYLPGWP 60 LFSPPKLQLD KCTKCSREFC SSINFRRHTR VHRRTLKLDK DFPKNRDHIA AFWDKLTVDE 120 AKTILSFLDV AIEGVTGSSV LTALTSWMCK PGYASLPVAY ARAGSELLDL IQTKASLHLH 180 VSSNELFSVL DEASENTFLC TNTTAYIQKF LFEGEADKVA TELKNVVACA SYMLEKKLVE 240 AWSADKAAEA LRCQKLLVEE EEAAQKRQAE LMERKRMKKL RQKEQRSKDP KDEEVSVHLS 300 EIVIVASGSP KIQSLKAVSD PGLYEQEDSQ HPQFEAQDDN GFNVGRSVEG TSCDSGHEMG 360 ADVITTQQVI SRHHIGGTEN LAQNSFSSTT ALASKHPARH SSYRNPNVCT FSNRNKTWER 420 KVRADTEQQC PKHELDIDDG LGKSSRVLIG SISVAIEDGS EHSQEFRDPK HDSASPSSKI 480 TNNSVTEMMG PLRHEESRNN GNITPAVEKH LSSSVMTYDS SYSTRCNADL AGCGRLQCTT 540 FSSEEATAFL SRRWKDAVAG DHVKLVLCPE K

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MNASKRYNHI TDKDNAETAR DIMTTSGQIQ PLKIPDAVVA LAQAAAKANG ETEKYLPGWP  60
LFSPPKLQLD KCTKCSREFC SSINFRRHTR VHRRTLKLDK DFPKNRDHIA AFWDKLTVDE  120
AKTILSFLDV AIEGVTGSSV LTALTSWMCK PGYASLPVAY ARAGSELLDL IQTKASLHLH  180
VSSNELFSVL DEASENTFLC TNTTAYIQKF LFEGEADKVA TELKNVVACA SYMLEKKLVE  240
AWSADKAAEA LRCQKLLVEE EEAAQKRQAE LMERKRMKKL RQKEQRSKDP KDEEVSVHLS  300
EIVIVASGSP KIQSLKAVSD PGLYEQEDSQ HPQFEAQDDN GFNVGRSVEG TSCDSGHEMG  360
ADVITTQQVI SRHHIGGTEN LAQNSFSSTT ALASKHPARH SSYRNPNVCT FSNRNKTWER  420
KVRADTEQQC PKHELDIDDG LGKSSRVLIG SISVAIEDGS EHSQEFRDPK HDSASPSSKI  480
TNNSVTEMMG PLRHEESRNN GNITPAVEKH LSSSVMTYDS SYSTRCNADL AGCGRLQCTT  540
FSSEEATAFL SRRWKDAVAG DHVKLVLCPE K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	ERKRMKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462846232

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022680015.1	0.0	uncharacterized protein LOC101770765
TrEMBL	A0A368PYS8	0.0	A0A368PYS8_SETIT; Uncharacterized protein
STRING	Si029321m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-85	C2H2-like zinc finger protein