PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846331
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family E2F/DP
Protein Properties Length: 378aa    MW: 42313.5 Da    PI: 5.4649
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846331genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.61.2e-2480139771
    E2F_TDP   7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                +llt+kf++ll+++++g+++ln++a++L    v  ++RRiYDi+NVLe+++liek+ kn irwkg
  462846331  80 GLLTKKFINLLKEAKDGTIDLNKAAESL---GV--QKRRIYDITNVLEGVHLIEKTTKNMIRWKG 139
                589*************************...**..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023195.6E-2380139IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-1580140IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-2580140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-2880139IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.17E-33151263No hitNo description
SuperFamilySSF1440742.88E-23152262No hitNo description
PfamPF164211.4E-23155260IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLPPPAPQAV QKGLEKATPP FNDENNGIGN SLTEVKREGT VQGHDKASAT ASVKVIKRPK  60
KVQASKRTLD GSETLGTVEG LLTKKFINLL KEAKDGTIDL NKAAESLGVQ KRRIYDITNV  120
LEGVHLIEKT TKNMIRWKGF DMLNPKETEL QISTLKEERE SVNVEDHRLN DEIREAQEKL  180
QALALDEDKR KFMYVLNEDI NKLPHFQGST LIAINAPRGT SIEVPDPDED KYKFGNLGFK  240
DKHYRIILRS SMGPIDCYLI SSDHQETFNP DHQVMPNNSV QHMDCDPNQS VQHMDCDPNQ  300
SVQMDCDPNE TVQWMHCDPS RAPKKGESNA ACTHTAEPSR RHESMAGILR IIPSDAGADA  360
DYWFASDPDV SVTDTWGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-20801391373PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846331
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975004.11e-148transcription factor E2FC
RefseqXP_025824426.11e-149transcription factor E2FB-like isoform X1
TrEMBLA0A3L6PRT91e-155A0A3L6PRT9_PANMI; Transcription factor E2FC-like
STRINGGRMZM2G050590_P011e-134(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.35e-74E2F transcription factor 1