PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462846379

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

bZIP

Protein Properties

Length: 471aa MW: 50199.2 Da PI: 10.5328

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462846379	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.5	1.1e-11	1	52	11	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++NRe+A+ sRqRKk+++eeLeekvk++ + +L ++++ e a+l+++ 462846379 1 MRNRESAQLSRQRKKKYVEELEEKVKSMHSVINDLNSRISFVVAENATLRQQ 52 7****************************999999999888888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-14	1	53	No hit	No description
SMART	SM00338	9.4E-7	1	55	IPR004827	Basic-leucine zipper domain
CDD	cd14704	1.29E-17	1	47	No hit	No description
PROSITE profile	PS50217	9.013	1	53	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-10	1	53	No hit	No description
Pfam	PF00170	2.0E-10	1	53	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MRNRESAQLS RQRKKKYVEE LEEKVKSMHS VINDLNSRIS FVVAENATLR QQLGNGSGNC 60 PPPGVVYPPA PLPGMPFPWV PGYAMRPHGS QVPLVPIPRL KPQPAAAAAV KVSKKPETKK 120 GAEGKSKTKT KKVASVSLLG LLFVALVFGA FVPGFNHSFG MSGRSDNIMF RNVGHSDARV 180 FSVTNHVKGS RAGLNSSDMI STDPGTMKGD TGGAEQKHQP AHNSSEILPA LLYVPRNGKH 240 VKINGNLIIH SVLASEKAVA HKASNGNGNQ SVKDRKETSV AIARYLSPSG KDTNSQETSP 300 ADAPLPQWFR EGMEGPILNS GMCSEVFQFD ISAASASPGG IIPASPIVNS SANATEKIPT 360 PAPAGGKLKN RRIMYNEAIP LTGKTVNGTE PRSFNRTSES SKLPDTDRKP ASSVVVSVLA 420 DPREAGNGDG DPRVSPKPLS RIFVVVLLDG VRYVTYSCTL PFKGASPHLV N

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MRNRESAQLS RQRKKKYVEE LEEKVKSMHS VINDLNSRIS FVVAENATLR QQLGNGSGNC  60
PPPGVVYPPA PLPGMPFPWV PGYAMRPHGS QVPLVPIPRL KPQPAAAAAV KVSKKPETKK  120
GAEGKSKTKT KKVASVSLLG LLFVALVFGA FVPGFNHSFG MSGRSDNIMF RNVGHSDARV  180
FSVTNHVKGS RAGLNSSDMI STDPGTMKGD TGGAEQKHQP AHNSSEILPA LLYVPRNGKH  240
VKINGNLIIH SVLASEKAVA HKASNGNGNQ SVKDRKETSV AIARYLSPSG KDTNSQETSP  300
ADAPLPQWFR EGMEGPILNS GMCSEVFQFD ISAASASPGG IIPASPIVNS SANATEKIPT  360
PAPAGGKLKN RRIMYNEAIP LTGKTVNGTE PRSFNRTSES SKLPDTDRKP ASSVVVSVLA  420
DPREAGNGDG DPRVSPKPLS RIFVVVLLDG VRYVTYSCTL PFKGASPHLV N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462846379

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004962093.1	0.0	bZIP transcription factor 39
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	A0A0A9JME2	0.0	A0A0A9JME2_ARUDO; Uncharacterized protein
STRING	Si021442m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	1e-76	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]