PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846454
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HD-ZIP
Protein Properties Length: 184aa    MW: 20874.3 Da    PI: 6.297
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846454genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-1960113356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  462846454  60 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 113
                56689***********************************************99 PP
2HD-ZIP_I/II109.22.9e-3560141283
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                  kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n+rLe+e
    462846454  60 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFSKLRAAHDAVVLQNCRLETE 141
                  9******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8655115IPR001356Homeobox domain
SMARTSM003892.6E-1658119IPR001356Homeobox domain
SuperFamilySSF466896.84E-1759123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-1760113IPR009057Homeodomain-like
CDDcd000862.44E-1660115No hitNo description
PfamPF000461.3E-1660113IPR001356Homeobox domain
PRINTSPR000313.6E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000313.6E-695111IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGCQEEERLL FPSSFAFVPE SFAEADTAGS GGEQKKARQR RRRKPKPAAD GAEGGDEQAK  60
KRRLSDEQAQ FLEMSFRKER KLETPRKVQL AAELGLDAKQ VAVWFQNRRA RHKSKLMEEE  120
FSKLRAAHDA VVLQNCRLET EFGVEEEAAA DLSYMSDYAY NNYMMDFATA AGGYFGGVYD  180
HPFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14162RRKPKPAADGAEGGDEQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431631e-139BT043163.2 Zea mays full-length cDNA clone ZM_BFc0114N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792589.15e-81homeobox-leucine zipper protein HOX12-like
SwissprotA2XDK57e-71HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBLA0A2S3ITN01e-79A0A2S3ITN0_9POAL; Uncharacterized protein
TrEMBLA0A2T7CG921e-79A0A2T7CG92_9POAL; Uncharacterized protein
STRINGPavir.Ib00656.1.p5e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-32homeobox protein 40