PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846634
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C2H2
Protein Properties Length: 605aa    MW: 69329.9 Da    PI: 8.2594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846634genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000197092123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC  Cg +F  + +Lk+H+++H
  462846634 70 HKCLECGACFQKPAHLKQHMQSH 92
               79*******************99 PP
2zf-C2H222.52.9e-07151175123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                + Cp  dC+ s++rk++L+rH+ tH
  462846634 151 FNCPleDCPFSYKRKDHLNRHMLTH 175
                78**********************9 PP
3zf-C2H215.45.4e-05179204123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++C    C+++Fs k n++rHi+  H
  462846634 179 FSCAvdGCDRRFSIKANMQRHIKEiH 204
                789999*****************988 PP
4zf-C2H217.11.5e-05216239123
                EEET.TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                ++C+  C+ksF+  s Lk+H  +H
  462846634 216 FVCKeGCNKSFKYLSRLKKHEESH 239
                89******************9988 PP
5zf-C2H215.64.5e-05306330223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+   C  +Fs+ksnL++H++  H
  462846634 306 KCTfeGCEHTFSNKSNLTKHMKAcH 330
                799999****************955 PP
6zf-C2H215.64.5e-05486510223
                EET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                kC+   C  +Fs+ksnL++H++  H
  462846634 486 KCTfeGCEHTFSNKSNLTKHMKAcH 510
                799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355232447IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5937097IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-57095IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0357092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-7149177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.1E-4151175IPR015880Zinc finger, C2H2-like
PfamPF000962.7E-5151175IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097151180IPR007087Zinc finger, C2H2
PROSITE patternPS000280153175IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-8161210No hitNo description
Gene3DG3DSA:3.30.160.606.3E-8179206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.468179209IPR007087Zinc finger, C2H2
SMARTSM003550.0027179204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280181204IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-5212239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.575216239IPR007087Zinc finger, C2H2
SMARTSM003550.13216239IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
SMARTSM003558.2247272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
SMARTSM0035515275296IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.95E-8290347No hitNo description
PROSITE profilePS5015711.884305335IPR007087Zinc finger, C2H2
SMARTSM003550.012305330IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-6306330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280307330IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-5331358IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.9336362IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280338362IPR007087Zinc finger, C2H2
SMARTSM003558.2427452IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280429452IPR007087Zinc finger, C2H2
SMARTSM0035515455476IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.44E-8470527No hitNo description
PROSITE profilePS5015711.884485515IPR007087Zinc finger, C2H2
SMARTSM003550.012485510IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-6486510IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280487510IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-5511538IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.9516542IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280518542IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MCSGDEIDGG GRVGQATCKD IRRYKCEFCA IVRSKKCLIQ AHMVENHKDE LDQSEIYNSN  60
GEKIIYEVEH KCLECGACFQ KPAHLKQHMQ SHSQEVGMTS CEASTRLPRS RQPIELPYGC  120
FEKMHEDPIS KCHLRKLGPF FISSQLAMRL FNCPLEDCPF SYKRKDHLNR HMLTHQGKFS  180
CAVDGCDRRF SIKANMQRHI KEIHEDENTA KSDQQFVCKE GCNKSFKYLS RLKKHEESHV  240
KLNYVEVVCC EPGCMKMFTN VECLRAHNQS CHQYIQCEIC GEKHLKKNIK RHLQAHEEVP  300
SSERMKCTFE GCEHTFSNKS NLTKHMKACH DNVKPFSCRF AGCDKAFTYK HVRDNHEQSS  360
AHGDFEEIDA QLQSRPRGGR KRKSLTVETL TRKRVTIPGQ ASATDDGVEY LRWLLSGGDV  420
KLNYVEVVCC EPGCMKMFTN VECLRAHNQS CHQYIQCEIC GEKHLKKNIK RHLQAHEEVP  480
SSERMKCTFE GCEHTFSNKS NLTKHMKACH DNVKPFSCRF AGCDKAFTYK HVRDNHEQSS  540
AHGDFEEIDA QLQSRPRGGR KRKALTVETL TRKRVTIPGE ASATDDGVGY LRWLLSGGDG  600
SSQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1215133243190PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1215133243190PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1554562RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.10.0transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-101TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2T7F0W90.0A0A2T7F0W9_9POAL; Uncharacterized protein
TrEMBLA0A2T8KTL10.0A0A2T8KTL1_9POAL; Uncharacterized protein
STRINGSi020193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-103transcription factor IIIA