PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846698
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 361aa    MW: 38434.7 Da    PI: 6.7909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846698genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.2e-062532901254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  462846698 253 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 290
                677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.18E-6251295No hitNo description
SuperFamilySSF474592.22E-11251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0061252296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-9255298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MADEWWSSAS HRSHGTSACS ATPLPSTDRV ICGGWTSPTA GTESTSSISF QDPYRSSATH  60
QPASDAASSL GDPHMDWTQA FLSGRSDASF QSVLQDDVAR AHPTADEAAM NRLAPSQALF  120
DSTAAAHNIS MYGNNQPSAD YDATAATQLS QLLKSSVPAS SPMQGGGGPM QQYLSGGYLP  180
FGGPLPSQLL LQALQPKLGS RGSNANTLMA KSNSGLAQDS CSPATRKSVS ESPAPAKRPR  240
IEAPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVASLSSP  300
YLKNGIPFQQ FQQKGAEDAK EDTKQDLRSR GLCLVPVANT YTVASETVPE FWHPTFGGTF  360
R
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698011e-132EU969801.1 Zea mays clone 335797 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817273.10.0transcription factor bHLH110-like isoform X2
TrEMBLA0A2S3HR100.0A0A2S3HR10_9POAL; Uncharacterized protein
STRINGSi001796m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.35e-49bHLH family protein