PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462846740
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 369aa    MW: 39976.4 Da    PI: 4.7169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462846740genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-1258911146
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     l++++++qlG++ W++ a++++ gRt++++k++w++
        462846740 58 LIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 91
                     789*********.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8472597IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-72854IPR009057Homeodomain-like
SuperFamilySSF466892.13E-142889IPR009057Homeodomain-like
SMARTSM007172.4E-122995IPR001005SANT/Myb domain
CDDcd001671.58E-103291No hitNo description
Gene3DG3DSA:1.10.10.601.2E-165892IPR009057Homeodomain-like
PfamPF002491.9E-105891IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEKNPGAAPT SPEGEEEKRA EEAAPVALKK GPWSAAEDAM LTDHVRRHGE GNWNAEVLIA  60
QLHAQLGNKW ARMAAHLPGR TDNEIKNYWN TRTKRRQRAG LPVYPPEVQL QLALSKRCRF  120
DDLSPLAPWQ LAMTSSQTVQ FLSAPSSPWT TTKSFARNAH YFQFAAHSSP VSPSTPTPPP  180
MHPATRDLSL GYGVQSRVPP SSPGPRVELP SNQFVQAPPP PSSAGDALPE QQNAASLEKM  240
LRELHEVIKV DPPAQLVPAA NDGGDAEPEQ PVLELEGHVG GENKPEGELK DDIETLFDLM  300
IPQFNESEPA PPAPAPNHSG SISQQSSDDQ DLSNVDLGVD LPVAGAASSP DQEWSLDGVC  360
QWNNVSRIC
Cis-element ? help Back to Top
SourceLink
PlantRegMap462846740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425373e-80BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275323e-80KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982528.11e-143myb-related protein P
TrEMBLA0A1E5VV011e-146A0A1E5VV01_9POAL; Transcription factor GAMYB
STRINGPavir.Ib03827.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-37myb domain protein 33