PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462847118
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family TALE
Protein Properties Length: 427aa    MW: 48889 Da    PI: 7.6633
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462847118genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-071601932154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  462847118 160 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 193
                569*****************************87 PP
2Homeobox22.61.8e-073764092154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  462847118 376 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 409
                569*****************************87 PP
3ELK30.21e-10114135122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++L+++++E++
  462847118 114 ELKHELKQGYREKLVDIREEIM 135
                9********************8 PP
4ELK30.21e-10330351122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++L+++++E++
  462847118 330 ELKHELKQGYREKLVDIREEIM 351
                9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.0E-131058IPR005541KNOX2
PfamPF037915.3E-111957IPR005541KNOX2
SMARTSM011883.8E-4114135IPR005539ELK domain
PfamPF037891.5E-6114135IPR005539ELK domain
PROSITE profilePS5121310.196114134IPR005539ELK domain
PROSITE profilePS5007111.758134197IPR001356Homeobox domain
SMARTSM003893.3E-10136201IPR001356Homeobox domain
SuperFamilySSF466891.28E-15136200IPR009057Homeodomain-like
CDDcd000863.63E-10137198No hitNo description
Gene3DG3DSA:1.10.10.603.8E-24141198IPR009057Homeodomain-like
PfamPF059205.1E-18154193IPR008422Homeobox KN domain
SMARTSM012562.4E-13229274IPR005541KNOX2
PfamPF037913.7E-11233273IPR005541KNOX2
SMARTSM011883.8E-4330351IPR005539ELK domain
PfamPF037891.5E-6330351IPR005539ELK domain
PROSITE profilePS5121310.196330350IPR005539ELK domain
PROSITE profilePS5007111.758350413IPR001356Homeobox domain
SMARTSM003893.3E-10352417IPR001356Homeobox domain
SuperFamilySSF466891.2E-15352416IPR009057Homeodomain-like
CDDcd000863.63E-10353414No hitNo description
Gene3DG3DSA:1.10.10.603.8E-24357414IPR009057Homeodomain-like
PfamPF059205.1E-18370409IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MVRAARSSVS RSYFGETTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWELE QTLQSLTGAS  60
PGEGTGATMS DDEDNQVDSE SNMFEVNDGS DGMGFGPLML TEGERSLVER VRQELKHELK  120
QGYREKLVDI REEIMRKRRA GKLPGDTAST LKAWWQAHSK WPYPTEEDKA RLVQETGLQL  180
KQINNWFINQ RKRNWHSNPA SSSSDKSKRK RSLGRIGIAT WLRIMNEDAS SCLTHYVLLL  240
CSFKEQLQQH VRVHAMEAVM ACWELEQTLQ SLTGASPGEG TGATMSDDED NQVDSESNMF  300
EVNDGSDGMG FGPLMLTEGE RSLVERVRQE LKHELKQGYR EKLVDIREEI MRKRRAGKLP  360
GDTASTLKAW WQAHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPASSSS  420
DKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406426RKRNWHSNPASSSSDKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462847118
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0998780.0FP099878.1 Phyllostachys edulis cDNA clone: bphylf032a14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965738.11e-129homeobox protein knotted-1-like 11 isoform X2
RefseqXP_006656302.11e-130PREDICTED: homeobox protein knotted-1-like 11 isoform X2
RefseqXP_006656303.11e-130PREDICTED: homeobox protein knotted-1-like 11 isoform X3
RefseqXP_015693734.11e-130PREDICTED: homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-129KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLJ3MG941e-129J3MG94_ORYBR; Uncharacterized protein
STRINGOB06G30380.11e-130(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-114KNOTTED1-like homeobox gene 3