PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462847436

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YB

Protein Properties

Length: 66aa MW: 7480.37 Da PI: 5.0974

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462847436	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	38	3.8e-12	1	34	17	50
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtsea 50 mk vlP +akisk aket+qec++ef++f + a 462847436 1 MKDVLPPQAKISKRAKETIQECATEFVGFSEELA 34 89***************************76655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-8	1	30	IPR009072	Histone-fold
Pfam	PF00808	1.6E-5	1	42	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.23E-6	1	41	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MKDVLPPQAK ISKRAKETIQ ECATEFVGFS EELAAALNSS SGREIQIDVR DELSIFRGNE 60 QRRDRN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462847436

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	2e-10	nuclear factor Y, subunit B4