PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462847520

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 1167aa MW: 128148 Da PI: 9.1968

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462847520	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.9	5.2e-06	124	180	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++ F+ + ++ ++e +e++ +g+t +qV+ +F +R + +k 462847520 124 KKPRDLLNPKAVKYMQSIFALKDTIGKKETREISVLCGVTVTQVREFFASQRSRVRK 180 799**************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.924	121	181	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.51E-6	123	183	IPR009057	Homeodomain-like
SMART	SM00389	8.2E-4	123	185	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.2E-5	124	182	IPR009057	Homeodomain-like
CDD	cd00086	4.53E-4	124	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
VPSHLARVPI SFLLLAPHLQ TLTPPRRRPP PRHHTAQQKG QPDAQPPVGP MELVAFKPAV 60 GALVEAGGGA DAGSIPAMVA AQQEMLHTQV DQLQSLVITQ CRLTGVNPLA QEMAAGALSI 120 KIGKKPRDLL NPKAVKYMQS IFALKDTIGK KETREISVLC GVTVTQVREF FASQRSRVRK 180 VVNLSREKVL KIEAPKEHHD ACSITTEQTP LDIEARAEII EPLRTLGPVE VPRSSSQPTD 240 VPQFYLQPVL VQQSSLQPTD ALQNSLQQLE VQQNHAAPII PSGTILMQPT DAKINPDSVQ 300 KESKEEEVPG VESEDKKFFD SIFALTQKEE TFSGQVKLMD WILQINNITI LSWFVTMGGL 360 TIVSAWLSQA AVEEQTSVIL VIFKVLLHLP LHKALPAHMS TVLQTINRLR FYRTQDISSK 420 AKIILSRLSK VLVRSKALRM PQKDLTEKQR ISEILGDESW KSEVGITEEI LALTDGANEN 480 RKPEPRKTPM LLTASADEPS KKSAPQTKSK QKRKVLLVEH PNKKAAGKSA HSVRSISTNN 540 SRPLSADDIQ KAKMRAMFMQ EKYGKVDTGK ASDKLQTMET QKSSGFHNSI VPPLPKSPVT 600 STTKEPVDLS PQTSKQSTVP QTDKAETTDG LKLKISSPKH VIEKLDSKRV LWQIPPAVWI 660 DPSWSVGAGE NSKELEVQTQ RNRREKETFY ANQRDIPLNP KDPWDLEMDF DDSLTPEIPI 720 EQQPDADNME TDTVGTAPPA TNPQLVFALT SNKGESVPSE QTIALLDTLK RTGLELSDLV 780 NNLANGAAVA PKGPPQPEPV PTSLPSPTPA SDHTAMAGWG PEHPTQARAP SVQHPQSSNR 840 GHTPPIGNTV QQSFSNVVSP LPSQPYASVS VLPAQNQMNV PSLPQLATSV NPPIQHVSPV 900 NNHPNRASVH QHAQQYALVS DPVATSFHQQ PAVNKVTHGL ENISNPAVAH ASMPESNACH 960 TTFPWQSNVA PVASTGRGTS PDPWAVRTTN SYNIASTNTV PYANQNFYGN HSAQNGQGAY 1020 GSVSVSSHAV LPAHTPDRNG YSHPAEYQTL SRDSYRRHSK SPELVGSGHD YGGTQGYNAR 1080 TWNGAGQQSY NPEPSRQLIS ARQSYTAAEP SRQQWSSGHE SYNFEPSRPW SSSQQGQNPE 1140 TSRPWNLGNQ DHYNPNDVRR SYDRWRR

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

VPSHLARVPI SFLLLAPHLQ TLTPPRRRPP PRHHTAQQKG QPDAQPPVGP MELVAFKPAV  60
GALVEAGGGA DAGSIPAMVA AQQEMLHTQV DQLQSLVITQ CRLTGVNPLA QEMAAGALSI  120
KIGKKPRDLL NPKAVKYMQS IFALKDTIGK KETREISVLC GVTVTQVREF FASQRSRVRK  180
VVNLSREKVL KIEAPKEHHD ACSITTEQTP LDIEARAEII EPLRTLGPVE VPRSSSQPTD  240
VPQFYLQPVL VQQSSLQPTD ALQNSLQQLE VQQNHAAPII PSGTILMQPT DAKINPDSVQ  300
KESKEEEVPG VESEDKKFFD SIFALTQKEE TFSGQVKLMD WILQINNITI LSWFVTMGGL  360
TIVSAWLSQA AVEEQTSVIL VIFKVLLHLP LHKALPAHMS TVLQTINRLR FYRTQDISSK  420
AKIILSRLSK VLVRSKALRM PQKDLTEKQR ISEILGDESW KSEVGITEEI LALTDGANEN  480
RKPEPRKTPM LLTASADEPS KKSAPQTKSK QKRKVLLVEH PNKKAAGKSA HSVRSISTNN  540
SRPLSADDIQ KAKMRAMFMQ EKYGKVDTGK ASDKLQTMET QKSSGFHNSI VPPLPKSPVT  600
STTKEPVDLS PQTSKQSTVP QTDKAETTDG LKLKISSPKH VIEKLDSKRV LWQIPPAVWI  660
DPSWSVGAGE NSKELEVQTQ RNRREKETFY ANQRDIPLNP KDPWDLEMDF DDSLTPEIPI  720
EQQPDADNME TDTVGTAPPA TNPQLVFALT SNKGESVPSE QTIALLDTLK RTGLELSDLV  780
NNLANGAAVA PKGPPQPEPV PTSLPSPTPA SDHTAMAGWG PEHPTQARAP SVQHPQSSNR  840
GHTPPIGNTV QQSFSNVVSP LPSQPYASVS VLPAQNQMNV PSLPQLATSV NPPIQHVSPV  900
NNHPNRASVH QHAQQYALVS DPVATSFHQQ PAVNKVTHGL ENISNPAVAH ASMPESNACH  960
TTFPWQSNVA PVASTGRGTS PDPWAVRTTN SYNIASTNTV PYANQNFYGN HSAQNGQGAY  1020
GSVSVSSHAV LPAHTPDRNG YSHPAEYQTL SRDSYRRHSK SPELVGSGHD YGGTQGYNAR  1080
TWNGAGQQSY NPEPSRQLIS ARQSYTAAEP SRQQWSSGHE SYNFEPSRPW SSSQQGQNPE  1140
TSRPWNLGNQ DHYNPNDVRR SYDRWRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	766	771	DTLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462847520

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815839.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	1e-102	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2S3HNA2	0.0	A0A2S3HNA2_9POAL; Uncharacterized protein
STRING	Pavir.Ea03823.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-95	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]