PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462847719
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family CAMTA
Protein Properties Length: 497aa    MW: 55551.6 Da    PI: 7.8775
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462847719genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1138.42.2e-4338437118
       CG-1  37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                gsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah++en++fqrr+ywlLee + +ivlvhylevk
  462847719   3 GSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGDENSNFQRRTYWLLEEGFMNIVLVHYLEVK 84 
                9******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143760.695189IPR005559CG-1 DNA-binding domain
SMARTSM010766.8E-39184IPR005559CG-1 DNA-binding domain
PfamPF038598.2E-37283IPR005559CG-1 DNA-binding domain
SMARTSM000150.094310332IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-8311361IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.828311340IPR000048IQ motif, EF-hand binding site
PfamPF006120.0024312331IPR000048IQ motif, EF-hand binding site
SMARTSM000150.011333355IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.359334358IPR000048IQ motif, EF-hand binding site
PfamPF006121.1E-4336355IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGGSLFLFDR KILRYFRKDG HNWRKKKDGK TVKEAHEKLK VGSVDVLHCY YAHGDENSNF  60
QRRTYWLLEE GFMNIVLVHY LEVKGGKENF SRAKEAEEIA GLSNADSPAC SNSFASQSQV  120
HDDGKGPNVL GKEGQGVIHL VAALGYDWAI RPIVAAGGEH RSTTETVNAA DGSSVPINEQ  180
LEAFVVSPSL SQDQLFSIID VSPSWAYAGS KSKAGNVEEI CGSAAAAEFA ESCSDQLACV  240
DSEAEPLKDS LSAVRKSTQA AARIFQAFRV ESFHRKKVIE YGDDDCGLSD ERTLSLVSLK  300
NARPGQGDVP LHSAAVRIQN KFRGWKGRKE FMIIRQKIVK IQAHVRGHQV RKSFRKIVWS  360
VGIVEKVILR WRRKRRGLRG FQAEKQLEGP SQIQPAGVVQ PATVEDEYDF LKDGRKQAER  420
RLQIALDRVH SMTRYPEATE QYHRLRTRVN ELQESQEMQD RMLSDSHGAD GTPGGDFMAE  480
LEEICRDDGD TPMSTIT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462847719
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800735.11e-166calmodulin-binding transcription activator 3-like
SwissprotQ9FY743e-84CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLA0A1E5VCX21e-168A0A1E5VCX2_9POAL; Calmodulin-binding transcription activator 1
STRINGPavir.Ba00386.1.p1e-164(Panicum virgatum)
STRINGPavir.Bb03367.1.p1e-168(Panicum virgatum)
STRINGGRMZM2G017368_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.12e-75ethylene induced calmodulin binding protein