PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462847998

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

LBD

Protein Properties

Length: 257aa MW: 27775.7 Da PI: 9.9675

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462847998	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.3	1.1e-18	18	87	1	68
DUF260 1 aCaaCkvlrrkCakdCvlapyfpa.eqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAear 68 +CaaC +l r+C+++Cv+ap+fpa ++p++f +vh FGa+nv ++l +p+++ r d++++lv +A r 462847998 18 RCAACELLDRACESGCVFAPHFPAgDDPARFGAVHAAFGADNVARFLGCVPPDRrRADVARCLVLNAPRR 87 6*********************556*******************98886899****999777 PP
2	DUF260	53.2	8.8e-17	118	208	6	100
DUF260 6 kvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++lrr C+++C+l yfp e+ +++fa+vh +Gasn+ ++p e r +a+++ vyeA+ r+ Pv Ga+g +l q ++ ++ +la++++e 462847998 118 RHLRRPCVPNCPLWSYFPPEDeSERFAAVHAAYGASNL-----DTPAEPRGAAAATCVYEARRRQTAPVFGATGDVLLPQTAIKMTEGQLAATHKE 208 89*************776549**********8.....568888***************************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.744	17	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-17	18	88	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	10.373	112	209	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.8E-16	118	206	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSSKGKEAAR APSSPGGRCA ACELLDRACE SGCVFAPHFP AGDDPARFGA VHAAFGADNV 60 ARFLGCVPPD RRRADVARCL VLNAPRRLAG RGVPAHRVRA QLPRGRRPGQ RRRRWKGRHL 120 RRPCVPNCPL WSYFPPEDES ERFAAVHAAY GASNLDTPAE PRGAAAATCV YEARRRQTAP 180 VFGATGDVLL PQTAIKMTEG QLAATHKELA AYVGEEPSQG IQVSFLSAST VPYYIISRLS 240 SVFDCCHSRS LKQLISA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-13	11	212	2	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-13	11	212	2	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462847998

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	3e-15	LOB domain-containing protein 20